Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20513
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.094
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.1  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 0.094
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 396 SLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 280
           SLL+ +TV C+ A++++      + +++ DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 667 DVHNVEGAGMSLAGHDV 617
           DVH V GAG  +  HDV
Sbjct: 110 DVHGVIGAGHWIGDHDV 126


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -1

Query: 510 RDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQ 331
           +D    +W+  G  +M +    + R G+  +  T L+ ++L    + CE  +NI    K 
Sbjct: 56  QDVHVMIWIGFGF-LMTF----LRRYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKS 110

Query: 330 FISL 319
           ++SL
Sbjct: 111 YLSL 114


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = -3

Query: 634 LAGHDVPTRPKLRPPVIIHKFPDSNLMKSIIFVVAMSNWM 515
           L   D P +P   PP      PDS  +  I  +    N M
Sbjct: 332 LGDSDTPPKPAPPPPPPSSSGPDSAKLDKIFDIATKENAM 371


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 202 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 101
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 461 RMMAAPSATQTHLSKSRFHPVRH 529
           R++  PSA +T LSK  +  + H
Sbjct: 233 RLLDEPSANRTDLSKDDYESLVH 255



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 80  RSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPE 187
           +S++ DV ++WR +  E  NR+    R++    + E
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMILTEAYTE 296


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 490 LGSGWCGHHALPSTEHS*VRSPH 422
           +G G    HA P   HS   +PH
Sbjct: 419 MGHGHSHIHATPHHHHSHAATPH 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,718
Number of Sequences: 438
Number of extensions: 4638
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)