Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20512
         (434 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   1.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   2.9  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   5.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   5.1  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   6.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.7  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       20   8.9  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 11/52 (21%), Positives = 25/52 (48%)
 Frame = +3

Query: 9   PLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVWYRILDSIGKLSVITN 164
           P++ +  +  +M+   R++++   RP   R         +LDS+ KL  + +
Sbjct: 459 PIYFVAESFDDMKDKFRRWVSAMSRPFEVRFNPHTGRVEVLDSVEKLETLVH 510


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 259 CHVLLTYCSSEPCVNAYT 206
           C   +  C S PC+N  T
Sbjct: 58  CQNRINLCDSSPCLNGAT 75



 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 259 CHVLLTYCSSEPCVNAYT 206
           C   + +CS+ PC N  T
Sbjct: 96  CGEYVDWCSTNPCENQAT 113



 Score = 20.2 bits (40), Expect = 8.9
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = -2

Query: 259 CHVLLTYCSSEPCVNAYT 206
           C   +  C S PC N  T
Sbjct: 181 CQTEINECDSAPCQNGGT 198



 Score = 20.2 bits (40), Expect = 8.9
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = -2

Query: 259 CHVLLTYCSSEPCVN 215
           C   + +C++ PC N
Sbjct: 335 CESKVNFCATSPCQN 349


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 256 HVLLTYCSSEPCVNAYTSRGMNSDVNAI 173
           H+L    S+ P  +AY   GM+ +V+ I
Sbjct: 172 HLLTIAVSAIPIDDAYDIPGMSENVDVI 199


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 116 DADVGDALRHGAAEAREELARVQPHLQHVVDQREQ 12
           DA   D  RH   E  + L     HLQ++  QR+Q
Sbjct: 63  DAMKKDPARHSKLEKADILEMTVKHLQNL--QRQQ 95


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 319 HGPPVRGVERRVLEHGDVEVCHVLLT 242
           HGPP+    R  + H    +C  L T
Sbjct: 93  HGPPIHHQIRPPILHDTQPMCESLNT 118


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 319 HGPPVRGVERRVLEHGDVEVCHVLLT 242
           HGPP+    R  + H    +C  L T
Sbjct: 93  HGPPIHHQIRPPILHDTQPMCESLNT 118


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 319 HGPPVRGVERRVLEHGDVEVCHVLLT 242
           HGPP+    R  + H    +C  L T
Sbjct: 93  HGPPIHHQIRPPILHDTQPMCESLNT 118


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = -2

Query: 259 CHVLLTYCSSEPCVNAYT 206
           CH  +  C   PC N  T
Sbjct: 65  CHENINDCKVNPCENGGT 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,348
Number of Sequences: 336
Number of extensions: 1217
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)