Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20512
(434 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 43 2e-05
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 29 0.41
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 25 5.0
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 25 5.0
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 24 8.8
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit... 24 8.8
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 24 8.8
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 24 8.8
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 24 8.8
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 43.2 bits (97), Expect = 2e-05
Identities = 24/62 (38%), Positives = 33/62 (53%)
Frame = +3
Query: 3 LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVWYRILDSIGKLSVITNGFIIAF 182
LAP+F+L+N VL +R +F ++PVP RV I W + L + L IT I F
Sbjct: 515 LAPIFSLVNCVLYIRSSVYRFTKMVKKPVPCRVDSIAPWDQRLSLLSWLGCITMPSICYF 574
Query: 183 TS 188
S
Sbjct: 575 YS 576
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 28.7 bits (61), Expect = 0.41
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = -1
Query: 236 LQRAVRERVHQPRDELRRERY-YEAVGDDAELADGVEDAVPDADVGDALR---HGAAEAR 69
+QR V + Q R E+ ++A+ EL D + PDA DAL+ H R
Sbjct: 269 VQRVVEPTIEQQRQSAHMEQQVFDALPQIDELLDTLSTTSPDAADDDALQGKYHAMIALR 328
Query: 68 EELARVQPHLQHVVDQREQ 12
+L R+ ++ Q+E+
Sbjct: 329 PKLVRL---IEKYASQKEE 344
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 277 HGDVEVCHVLLTYCSSE 227
HG VEV L YCS+E
Sbjct: 44 HGAVEVAQFLAKYCSAE 60
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 5.0
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -1
Query: 245 DVLLQRA--VRERVHQPRDELRRERYYEAVGDDAELADGVEDAVP-DADVGDALRHGAAE 75
DV++ A + E DEL + E D ADG +D+VP D GD E
Sbjct: 33 DVMMNEAPELSEDNDAQEDELEKLEDAELFMFDTGSADGAKDSVPLDIIAGDNTVKEDEE 92
Query: 74 AREELARV 51
A E+ +
Sbjct: 93 ASNEIPSI 100
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/47 (23%), Positives = 21/47 (44%)
Frame = +2
Query: 266 NITVLEHPPLNSTYGGTMCSFPGYWDYKNGKDYAHSTWYWHIIGATL 406
++ + ++ +++T M YW N A YW + GAT+
Sbjct: 22 DLDITDYQSIDNTVNIMMKDLMNYW---NASSQAFVASYWWVTGATM 65
>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
Tom40|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 84 PVPQRVTDIGVWYRILDSIGKLSVITNGFI-IAFTSEFIPRLVYAFT 221
P P+ +T +GV Y SI + V + G + + P + AF+
Sbjct: 259 PKPEGLTSVGVKYEFAQSIYRGQVDSKGRVGVYLERRLAPAITLAFS 305
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 155 DAELADGVEDAVPDADVGDALRHGAAEAREELA 57
D ++ DG+EDA D ++ R + ELA
Sbjct: 541 DQDIFDGIEDADADVEIMSMNRAAIKKREAELA 573
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 150 SVITNGFIIAFTSEFIPRLVYAFTHGSLEQYV--NNTW 257
+V+ +G +F+ ++YA TH + Y+ + TW
Sbjct: 109 NVMKDGVAFSFSEHSDTTIIYAITHARVLYYIRLSKTW 146
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 137 GVEDAVPDADVGDALRHGAAEAREELARVQPHLQH 33
G+ D + DAD + EAR ++A QH
Sbjct: 671 GIGDTIADADTMKEVTRTVKEARRQVAECIQDAQH 705
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,140,490
Number of Sequences: 5004
Number of extensions: 21162
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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