Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20512
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123... 47 6e-06
01_02_0041 + 10507142-10508572 31 0.41
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 29 1.2
02_01_0205 - 1379448-1379696,1379827-1379901,1379983-1380056,138... 29 1.6
06_01_0691 - 5040280-5040801,5041439-5041529,5042368-5042568,504... 29 2.2
06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390 28 2.9
10_06_0001 - 9366721-9367293 28 3.8
10_02_0135 + 5674786-5675040,5675179-5675490,5676505-5677010,567... 27 5.0
03_02_0816 + 11487811-11488708,11488835-11489235 27 5.0
01_01_1142 - 9057212-9057541,9058650-9058754,9058826-9058919,905... 27 5.0
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 27 6.6
08_02_0326 - 15810065-15810315,15811653-15811787,15812466-158125... 27 6.6
08_01_0628 - 5460030-5462960 27 6.6
06_03_1321 + 29308538-29308588,29308728-29308827,29308939-293091... 27 6.6
01_01_1106 + 8750597-8754031 27 6.6
09_02_0504 - 10013784-10014041,10014558-10014660,10014932-100150... 27 8.7
07_03_1620 - 28180020-28180862 27 8.7
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 27 8.7
>01_06_0433 -
29311749-29311859,29311958-29312116,29312208-29312315,
29312449-29312531,29312617-29312786,29312833-29312903,
29313170-29313302,29313483-29313749,29313865-29313969,
29314053-29314144,29314263-29314363,29314426-29314552,
29315025-29315140,29315222-29315291,29315476-29315685
Length = 640
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +3
Query: 15 FALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVWYRILDSIGKLSVITNGFII 176
FA +NNV E+R DA K L +RP P+ IG W I + +++ TN ++
Sbjct: 512 FAALNNVTEIRADALKLLVMLKRPAPRDAATIGAWLNIFQFLVVMAICTNCLLL 565
>01_02_0041 + 10507142-10508572
Length = 476
Score = 31.1 bits (67), Expect = 0.41
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = -2
Query: 274 GDVEVCHVLLTYCSSEPCVNAYTSRGMNSDVNAIMKPLVMTLSLPMESRMRYQTPMSVTR 95
GDV V L TYCS + ++AY +R + + PL +S P ++ ++V R
Sbjct: 146 GDV-VLMFLYTYCSIKNSIHAYVAR---AGATVVEVPLPFPVSSPDAIVAEFRAALAVAR 201
Query: 94 CGTGRRK 74
G GRR+
Sbjct: 202 DG-GRRR 207
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 29.5 bits (63), Expect = 1.2
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = -1
Query: 263 SLPRVVDVLLQRAVRERVHQPRDELRRERYYE---AVGDDAELADGVEDAVPDADVGDAL 93
+L VD++ + A R+R+H+ EL ++ + AV + +E + D D+
Sbjct: 2320 ALENKVDIIKEEAERQRMHREEIELELQKVRQQMLAVPSSGQATSSLEGGM--GDFTDSS 2377
Query: 92 RHGAAEAREELARVQPHLQ 36
RH + E + EL Q +++
Sbjct: 2378 RH-SREIKNELLAAQENIR 2395
>02_01_0205 -
1379448-1379696,1379827-1379901,1379983-1380056,
1380150-1380237,1380327-1380475,1380688-1380847,
1380933-1381088,1381177-1381365,1381481-1381714,
1381785-1382009,1382097-1382177
Length = 559
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = -1
Query: 215 RVHQPRDELRRERYYEAVGDDAELADGVEDAVPDADVGDALRHGAAEAREELARVQPHLQ 36
+V Q R +L+RE ++V + A + + + + + +EEL + P L+
Sbjct: 61 QVKQYRAQLQRE-IADSVAEVAAICATIGEPSTTVHIACSSLQSTGNLKEELGSITPELE 119
Query: 35 HVVDQREQRRQ 3
+ +RE+RR+
Sbjct: 120 EMRRRREERRR 130
>06_01_0691 -
5040280-5040801,5041439-5041529,5042368-5042568,
5042649-5046148
Length = 1437
Score = 28.7 bits (61), Expect = 2.2
Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -1
Query: 230 RAVRERVHQ-PRDELRRERYYEAVGDDAELADGVEDAVPDADVGDALRHGAAEAREELAR 54
RA R RV + + LRR R + A A LAD V P A VGD L GA A +ELA
Sbjct: 100 RAHRGRVKKLSKLALRRARDWRA--RVAGLADRVLALAPGAPVGDVL-DGARPAPDELAF 156
Query: 53 V 51
V
Sbjct: 157 V 157
>06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390
Length = 519
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = +2
Query: 233 GAVRQQHVADFNITVLEHPPLNSTYGGTMC-SFPGYWD-YKNGKDYAHSTWYWHIIGATL 406
GA + D ++ P Y T C + P + + K+GKD H W W G L
Sbjct: 147 GANNMEEKCDMSMGKWVREPKGPVYTNTTCPTLPDFKNCQKHGKDPGHLYWRWQPHGCDL 206
>10_06_0001 - 9366721-9367293
Length = 190
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = -1
Query: 251 VVDVLLQRAVRERVHQPRDELRRERYYEAVGDDAELADGVEDAVPDADVGD-ALRHGAAE 75
VV V+ + E + +E E E V DD +G V D D G+ ++ G +
Sbjct: 105 VVVVVEEEEEEEEEEEEEEEEEEEEEEEPVDDDDVGDNGQHSTVDDVDEGNVSVNDGNFD 164
Query: 74 AREELARVQPHL 39
+ E L +P +
Sbjct: 165 SEEILRHAEPEV 176
>10_02_0135 +
5674786-5675040,5675179-5675490,5676505-5677010,
5677057-5677103,5677457-5677918,5678071-5678294
Length = 601
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -1
Query: 167 AVGDDAELADGVEDAV--PDADVGDALRHG 84
AVGDDA DG D V D D GD +G
Sbjct: 405 AVGDDAATGDGEGDGVGDDDDDAGDGEAYG 434
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 179 RYYEAVGDDAELADGVEDAVPDADVGDALRHGAAEAREELARVQPHLQHVV 27
R+ G +A A G A+ ++ VG+ HGA E R E RV L+ +
Sbjct: 344 RHRRRWGLEAAAASGRSRAMAES-VGEVWGHGADEERHEAGRVGAALERAI 393
>01_01_1142 -
9057212-9057541,9058650-9058754,9058826-9058919,
9059721-9059917
Length = 241
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 143 ADGVEDAVPDADVGDALRHGAAEAREELARVQPHLQHV 30
A G EDA DA+ AL+ +E + + H++ V
Sbjct: 174 AAGTEDAEADAEYDGALKEAIQGVQEAVTSINEHMEEV 211
>08_02_0520 -
18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 27.1 bits (57), Expect = 6.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 362 YAHSTWYWHIIGATLAFVVVF 424
+ + WYW +GA +V+VF
Sbjct: 793 FTEAKWYWIGVGALFGYVIVF 813
>08_02_0326 -
15810065-15810315,15811653-15811787,15812466-15812564,
15813334-15813352
Length = 167
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 277 HGDVEVCHVLLTYCSSEPCVNAYTSRGMNSD 185
H + C+V LT+C + YTS D
Sbjct: 42 HIEKRTCYVSLTFCMRDETTTTYTSTSFTGD 72
>08_01_0628 - 5460030-5462960
Length = 976
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 200 RDELRRERYYEAVGD--DAELADGVEDAVPDAD 108
R+ L +RY + D D L DG+E A+PD D
Sbjct: 303 RERLANKRYLIVLDDVWDETLWDGLERAMPDGD 335
>06_03_1321 +
29308538-29308588,29308728-29308827,29308939-29309156,
29309251-29310591
Length = 569
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 69 TCFRRPVPQRVTDIGVWYRILDSIGKLSVITNGFIIAFTSEFIPRLVYAFTHGSLE 236
TCF P+ V W R + V G ++A S +P+L+ + + S+E
Sbjct: 92 TCFLTPLAGAVVADSYWGRYRTMVVGCCVAVAGMLMASLSALLPQLIESSSTLSME 147
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 27.1 bits (57), Expect = 6.6
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -2
Query: 220 VNAYTSRGMNSDVNAIMKPLVMTLSLPMESRMRYQTPMSVTRCGTGRRKHVRNLRASSRI 41
V A+ S G + D+N + + + L + + P SV G+ KH+R L SS +
Sbjct: 405 VRAFHSWGRSLDINLFLHSRFLRV-LDLRGSQIMELPQSV-----GKLKHLRYLDLSSSL 458
Query: 40 SSTL 29
STL
Sbjct: 459 ISTL 462
>09_02_0504 -
10013784-10014041,10014558-10014660,10014932-10015093,
10015416-10015549,10015633-10015716,10015839-10016129,
10016362-10016694,10016823-10016965,10017273-10017429,
10017513-10017616,10017728-10017888,10017971-10018287,
10018396-10018677,10018759-10019226,10019338-10019391,
10019689-10019742,10019943-10020021,10020108-10020196,
10021153-10021273,10022321-10022637
Length = 1236
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 377 WYWHIIGATLAFVVVF 424
WYW IGA L +V++F
Sbjct: 707 WYWISIGALLGYVLLF 722
>07_03_1620 - 28180020-28180862
Length = 280
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -2
Query: 244 TYCSSEPCVNAYTSRGMNSDVNAIMKPLVMTLSLPMESRMRYQTP 110
T C C A+++ + D N+I ++ + +PM + +TP
Sbjct: 141 TRCPRRICFFAHSAAELRDDPNSIASAILTPMPMPMPMSIPMRTP 185
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -1
Query: 233 QRAVRERVHQPRDELRRERYYEAVGDDAELADGVEDAVPDADVGDALRHGAAEAREELAR 54
+R +E+ + R E R++ E D + D D D DA HG+ + + E +
Sbjct: 759 RRKEKEKKEKERKEKERDKEKEREKDKGK--DRSRKDEMDIDAVDADSHGSKDKKREKDK 816
Query: 53 VQPHLQH 33
+ H +H
Sbjct: 817 EKKHKRH 823
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,198,375
Number of Sequences: 37544
Number of extensions: 162300
Number of successful extensions: 668
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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