Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20512
(434 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4927| Best HMM Match : DUF590 (HMM E-Value=0) 100 6e-22
SB_17356| Best HMM Match : DUF590 (HMM E-Value=0) 99 8e-22
SB_12150| Best HMM Match : DUF590 (HMM E-Value=0) 99 1e-21
SB_7827| Best HMM Match : DUF590 (HMM E-Value=1.8e-10) 98 3e-21
SB_4928| Best HMM Match : DUF590 (HMM E-Value=0) 75 2e-14
SB_40389| Best HMM Match : DUF590 (HMM E-Value=0) 74 6e-14
SB_1242| Best HMM Match : DUF590 (HMM E-Value=4.2e-05) 54 4e-08
SB_28119| Best HMM Match : DUF590 (HMM E-Value=1.4013e-45) 52 3e-07
SB_6421| Best HMM Match : DUF590 (HMM E-Value=2.5e-13) 46 2e-05
SB_38871| Best HMM Match : DUF590 (HMM E-Value=5.5e-21) 42 2e-04
SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11) 39 0.002
SB_35117| Best HMM Match : DUF590 (HMM E-Value=0.033) 38 0.004
SB_41078| Best HMM Match : DUF590 (HMM E-Value=0.0059) 36 0.014
SB_40116| Best HMM Match : EGF (HMM E-Value=0) 33 0.13
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_50943| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_47293| Best HMM Match : Exo_endo_phos (HMM E-Value=1.4e-06) 28 3.8
SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2) 27 6.7
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 27 6.7
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6) 27 6.7
SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5) 27 8.8
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0) 27 8.8
SB_7995| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_1628| Best HMM Match : DUF1590 (HMM E-Value=2.8) 27 8.8
SB_45116| Best HMM Match : EGF (HMM E-Value=0) 27 8.8
SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_4927| Best HMM Match : DUF590 (HMM E-Value=0)
Length = 936
Score = 100 bits (239), Expect = 6e-22
Identities = 46/87 (52%), Positives = 61/87 (70%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVWYRILDSIGKLSVITNGFIIAF 182
LAPLFAL+N V E+R+DA F+ FRRP P+R DIG W I+ + +SV+ N F+IAF
Sbjct: 710 LAPLFALVNAVFELRVDAINFVCQFRRPTPRRAQDIGAWMSIMQGLANISVLVNAFVIAF 769
Query: 183 TSEFIPRLVYAFTH---GSLEQYVNNT 254
TS+FIPRLVY + G+L Y+NN+
Sbjct: 770 TSDFIPRLVYTTAYSPDGTLRGYLNNS 796
Score = 32.7 bits (71), Expect = 0.13
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 326 FPGYWDYKNGKDYAHSTWYWHIIGATLAFVVVFENV 433
+PGY ++ Y S YWH+I A LAFV F+ +
Sbjct: 856 YPGY--HEPEFPYEVSKQYWHVIAARLAFVFAFQYI 889
>SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)
Length = 982
Score = 99 bits (238), Expect = 8e-22
Identities = 45/87 (51%), Positives = 63/87 (72%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVWYRILDSIGKLSVITNGFIIAF 182
LAP FAL NN+ E+R+D+ KF+ RRP+ R DIG+W+ ILDS+ K++VI+N F+IAF
Sbjct: 795 LAPFFALANNIFEIRIDSDKFVCEVRRPIADRAQDIGIWFNILDSVAKIAVISNAFLIAF 854
Query: 183 TSEFIPRLVYAFT---HGSLEQYVNNT 254
TS F+P+L+Y + + SLE Y N T
Sbjct: 855 TSTFLPKLLYRYAVSENFSLEGYTNYT 881
Score = 70.1 bits (164), Expect = 7e-13
Identities = 33/54 (61%), Positives = 39/54 (72%)
Frame = +3
Query: 3 LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVWYRILDSIGKLSVITN 164
LAP FAL NNV E+R+DA KF+ RR R DIGVW+ ILDSI KL+VI+N
Sbjct: 147 LAPFFALANNVFEIRIDADKFVNDLRRSTADRAQDIGVWFTILDSITKLAVISN 200
Score = 30.3 bits (65), Expect = 0.72
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = +2
Query: 335 YWDYKNGKDYAHSTWYWHIIGATLAFVVVFENV 433
Y ++++ + + + +YWH++ L FV++FE+V
Sbjct: 896 YQEFRDPEGH-FTVFYWHLLALRLGFVIMFEHV 927
>SB_12150| Best HMM Match : DUF590 (HMM E-Value=0)
Length = 393
Score = 99.1 bits (236), Expect = 1e-21
Identities = 43/75 (57%), Positives = 55/75 (73%)
Frame = +3
Query: 3 LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVWYRILDSIGKLSVITNGFIIAF 182
L P FALINN++E+RLDA KF FRRP+ R DIG+W+ IL + K+SV+ NGF+IAF
Sbjct: 165 LGPFFALINNLIEIRLDAYKFTCVFRRPMAARSQDIGIWFSILTGVTKISVVVNGFVIAF 224
Query: 183 TSEFIPRLVYAFTHG 227
SEF+PRL Y + G
Sbjct: 225 VSEFVPRLYYTYGLG 239
Score = 31.5 bits (68), Expect = 0.31
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Frame = +2
Query: 305 YGGTMCSFPGYWD----------YKNGKDYAHSTWYWHIIGATLAFVVVFENV 433
YG C F GY++ +N Y S +WHI+ A L FV+ F ++
Sbjct: 280 YGKATCRFRGYYEPPYIEIEGKWVENPSAYELSKAHWHIVAAKLFFVIAFLHI 332
>SB_7827| Best HMM Match : DUF590 (HMM E-Value=1.8e-10)
Length = 138
Score = 97.9 bits (233), Expect = 3e-21
Identities = 45/90 (50%), Positives = 67/90 (74%), Gaps = 6/90 (6%)
Frame = +3
Query: 3 LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVWYRILDSIGKLSVITNGFIIAF 182
LAPLF+L+N+++E+R+DA F++ FRRP DIG WYRIL+++ +LSV+ N F+++F
Sbjct: 16 LAPLFSLLNSIVEIRVDAINFVSQFRRPDTMIAEDIGAWYRILETLTRLSVLINAFVLSF 75
Query: 183 TSEFIPRLVYAF------THGSLEQYVNNT 254
TSEFIP+LVY + G+LE Y+NN+
Sbjct: 76 TSEFIPKLVYKLKYAPEGSEGTLEGYLNNS 105
>SB_4928| Best HMM Match : DUF590 (HMM E-Value=0)
Length = 897
Score = 75.4 bits (177), Expect = 2e-14
Identities = 38/84 (45%), Positives = 57/84 (67%)
Frame = +3
Query: 3 LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVWYRILDSIGKLSVITNGFIIAF 182
LAPLF+L+N+++E+R+DA F+ FRRP R DIG W RIL+ + KLSV+ N F++ +
Sbjct: 704 LAPLFSLLNSIVEIRVDAINFVRQFRRPDAARAEDIGAWSRILEGLTKLSVLVNAFLL-Y 762
Query: 183 TSEFIPRLVYAFTHGSLEQYVNNT 254
++ P + GSLE Y+NN+
Sbjct: 763 RLKYAPD---RDSGGSLEGYLNNS 783
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 281 EHPPLNSTYGGTMCSFPGYWDYKNGKDYAHSTWYWHIIGATLAFVVVFE 427
E+P + Y T C +PGY + N + + YWH+I LAFV VF+
Sbjct: 799 ENPLQSINYTVTTCRYPGY--HSNTAPFKFNKQYWHVIAGRLAFVFVFQ 845
>SB_40389| Best HMM Match : DUF590 (HMM E-Value=0)
Length = 320
Score = 73.7 bits (173), Expect = 6e-14
Identities = 34/62 (54%), Positives = 43/62 (69%)
Frame = +3
Query: 3 LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVWYRILDSIGKLSVITNGFIIAF 182
LAP FAL NNV E+R+DA KF+ RR R DIGVW+ ILDSI KL+VI+N F+
Sbjct: 209 LAPFFALANNVFEIRIDADKFVNDLRRSTADRAQDIGVWFTILDSITKLAVISNHFVFGI 268
Query: 183 TS 188
++
Sbjct: 269 ST 270
>SB_1242| Best HMM Match : DUF590 (HMM E-Value=4.2e-05)
Length = 195
Score = 54.4 bits (125), Expect = 4e-08
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +3
Query: 3 LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVW 119
LAPLFAL+NN+LE+R+DA F+ RRPV +R +IG W
Sbjct: 155 LAPLFALLNNILELRIDAINFVVTTRRPVAERARNIGSW 193
>SB_28119| Best HMM Match : DUF590 (HMM E-Value=1.4013e-45)
Length = 283
Score = 51.6 bits (118), Expect = 3e-07
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +3
Query: 3 LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVWYRILDSIGKLSVITN 164
LA L AL NNV+E+R DA K T RRP +RV +IG W ++ +G ++V+ N
Sbjct: 30 LAALCALANNVIEIRSDAFKLCTNLRRPFGERVENIGTWQDAMEVMGVVAVMVN 83
>SB_6421| Best HMM Match : DUF590 (HMM E-Value=2.5e-13)
Length = 422
Score = 45.6 bits (103), Expect = 2e-05
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +3
Query: 3 LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIG 113
LAPL AL++N+++M++DAR+ L RRP+ R DIG
Sbjct: 224 LAPLIALLSNLIDMKIDARRLLWVNRRPIAYRAEDIG 260
>SB_38871| Best HMM Match : DUF590 (HMM E-Value=5.5e-21)
Length = 319
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +3
Query: 3 LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVW 119
+A +AL+NNV+E+R DA K F+RP Q + IG W
Sbjct: 25 MAAFWALLNNVIEIRTDAFKMCRIFQRPFSQPASSIGAW 63
>SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11)
Length = 733
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +3
Query: 27 NNVLEMRLDARKFLTCFRRPVPQRVTDIGVW 119
NNV+E+R DA K T RRP +RV +IG W
Sbjct: 521 NNVIEIRSDAFKLCTNLRRPFGERVENIGTW 551
>SB_35117| Best HMM Match : DUF590 (HMM E-Value=0.033)
Length = 64
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 3 LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVW 119
+A + NNV+E+R DA K F+RP Q V+ IG W
Sbjct: 25 MAAFWPSSNNVIEIRTDAFKMCRIFQRPFSQPVSSIGAW 63
>SB_41078| Best HMM Match : DUF590 (HMM E-Value=0.0059)
Length = 184
Score = 35.9 bits (79), Expect = 0.014
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 99 VTDIGVWYRILDSIGKLSVITNGFIIAFTSE 191
V+ IGVWY +L + LS++TN I+ F+SE
Sbjct: 65 VSSIGVWYSVLYMMMILSMLTNSLIVGFSSE 95
>SB_40116| Best HMM Match : EGF (HMM E-Value=0)
Length = 340
Score = 32.7 bits (71), Expect = 0.13
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 265 EVCHVLLTYCSSEPCVNAYT 206
++CH+ + YC SEPC+N T
Sbjct: 34 KICHINVNYCDSEPCMNNAT 53
>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1603
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 283 LEHGDVEVCHVLLTYCS 233
LEH V+VCHV+ T+C+
Sbjct: 1082 LEHETVKVCHVVFTFCT 1098
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 307 VRGVERRVLEHGDVEVCHVLLTYCSSEPCVNAYT 206
+ G R LE C V + YC SEPC+N T
Sbjct: 7066 INGFTCRCLEGYIGAHCEVDVNYCDSEPCMNNAT 7099
>SB_50943| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 129 LDSIGKLSVITNGFIIAFTSEFIP 200
+DSI L N F ++ TSEF+P
Sbjct: 429 IDSIDSLCKTINDFFVSLTSEFVP 452
>SB_47293| Best HMM Match : Exo_endo_phos (HMM E-Value=1.4e-06)
Length = 744
Score = 27.9 bits (59), Expect = 3.8
Identities = 25/86 (29%), Positives = 35/86 (40%)
Frame = -2
Query: 328 ETAHGPPVRGVERRVLEHGDVEVCHVLLTYCSSEPCVNAYTSRGMNSDVNAIMKPLVMTL 149
E A G ++ V+ VLE D VC + P V+ + G D +P + +
Sbjct: 63 EEASGEQIQEVDEEVLETEDF-VCEENTEVNNETPSVSVNENGGKTVD-----EP-IGDI 115
Query: 148 SLPMESRMRYQTPMSVTRCGTGRRKH 71
SLP +R P S GRR H
Sbjct: 116 SLPQWNRWGTDAPPSAAVAKNGRRPH 141
>SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 117 WYRILDSIGKLSVITNGFIIAFTSEFIPRLVYAFTHGSLE 236
WY I+ + L +T F+ F +EF+ + Y F+ +E
Sbjct: 884 WYYII--VNSLIAVTVFFVFVFLNEFLRHIKYPFSSKGVE 921
>SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2)
Length = 341
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 284 HPPLNSTYGGTMCSFPGYWDYKNGKDYAHSTWYWHII 394
HP G + P Y + GK Y H TWY +I
Sbjct: 14 HPRYTELIKGKLYRHPWYTELIKGKVYRH-TWYTELI 49
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 259 CHVLLTYCSSEPCVNAYTSRGMNSDVNAIMKP 164
C + CS +PC+N+ T R +++ N +P
Sbjct: 986 CERRVYTCSDQPCLNSGTCRTVHNTYNCSCRP 1017
>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
Length = 1705
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -2
Query: 169 KPLVMTLSLPMESRMRYQTPMSVTRCGTGRRKHVRNLRASSRISSTLLISANS 11
+ + M +P + R+R + ++CG KH +N++ ++ SS LLI N+
Sbjct: 1038 RDMSMDDEIPNKGRLRVNSDSVSSQCG----KHKQNVQKNANDSSHLLIKENT 1086
>SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 325
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 48 LDARKFLTCFRR-PVPQRVTDIGVWYRILDSIGKLSVITNGFIIAFTSEFIPRLVYAFT 221
L +K+L R+ P P VTD+ W+ +++ + T ++ F + P + +T
Sbjct: 22 LKLQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATER-MLPFRASLKPGTQFTWT 79
>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1805
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = -1
Query: 251 VVDVLLQRAVRERVHQPRDELRRERYYEAVGDDAELADGVEDAVPDADV 105
+++ L + ++ + R +L +ER +EAV D EL G + + ++ +
Sbjct: 435 MIEAQLDKLMQYQEDIERHQLTKERLHEAVSDLLELTRGETEGLRESQI 483
>SB_7995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 236 LQRAVRERVHQPRDELRRERYYEAVGDDAELADGVEDAV 120
LQR + + Q RD RRE + V D ++ VED +
Sbjct: 102 LQRKHEQELRQVRDRTRRETITQFVRDHSDYMRCVEDDI 140
>SB_1628| Best HMM Match : DUF1590 (HMM E-Value=2.8)
Length = 111
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 51 DARKFLTCFRRPVPQRVTDI-GVWYRILDSIGKLSVITN 164
+ R FL C R + R+TD VW + D KL TN
Sbjct: 62 EKRIFLRCEREAIKTRITDAPTVWQNMADLTHKLPGPTN 100
>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
Length = 2023
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -2
Query: 259 CHVLLTYCSSEPCVNAYTSRGMNSDVNAIMKP 164
C + + C+S PC+N T M + N P
Sbjct: 235 CEIDIDECASNPCINGGTCTDMVNGYNCTCPP 266
>SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 197 DELRRERYYEAVGDDAELADGVEDAVPDADVGDALRHGAAEARE 66
D+ + +E +D DG E + P V AL GAA+ E
Sbjct: 616 DDSKNRAQFEHDREDQAACDGCETSNPGPFVNHALXQGAADNNE 659
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,955,540
Number of Sequences: 59808
Number of extensions: 173583
Number of successful extensions: 886
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -