Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20512
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical pr...    61   4e-10
Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical p...    55   3e-08
Z78062-8|CAD56570.2|  299|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AL021571-10|CAD56601.2|  299|Caenorhabditis elegans Hypothetical...    29   1.1  
U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical pr...    28   2.5  
AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical ...    28   2.5  
Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF025468-5|AAB71042.1|  390|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical
           protein F56A8.1 protein.
          Length = 1049

 Score = 60.9 bits (141), Expect = 4e-10
 Identities = 29/64 (45%), Positives = 40/64 (62%)
 Frame = +3

Query: 3   LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVWYRILDSIGKLSVITNGFIIAF 182
           LAPL ALI   ++MR+DA + +   R+P+P     IG+W  IL  +   +V TN FI+AF
Sbjct: 620 LAPLLALIIGFVDMRIDAHRLIWFNRKPIPIITNGIGIWLPILTFLQYCAVFTNAFIVAF 679

Query: 183 TSEF 194
           TS F
Sbjct: 680 TSGF 683


>Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical
           protein Y57G11C.37 protein.
          Length = 837

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 26/58 (44%), Positives = 38/58 (65%)
 Frame = +3

Query: 3   LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVWYRILDSIGKLSVITNGFII 176
           LA + ALINN++E+R+DA K     +RP  +RV DIG W + ++ +G L VI N  +I
Sbjct: 645 LAAVCALINNLIEIRVDAFKLCNTVQRPFGRRVKDIGAWQKAMEILGILGVIVNCALI 702


>Z78062-8|CAD56570.2|  299|Caenorhabditis elegans Hypothetical
           protein T19A6.1b protein.
          Length = 299

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 332 GYWDYKNGKDYAHSTWYWHIIGATLAFVVVF 424
           G WD+    D+  S W WH + + +  ++VF
Sbjct: 143 GKWDHFKEGDFIRSFWAWHDLASFIIALLVF 173


>AL021571-10|CAD56601.2|  299|Caenorhabditis elegans Hypothetical
           protein T19A6.1b protein.
          Length = 299

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 332 GYWDYKNGKDYAHSTWYWHIIGATLAFVVVF 424
           G WD+    D+  S W WH + + +  ++VF
Sbjct: 143 GKWDHFKEGDFIRSFWAWHDLASFIIALLVF 173


>U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical
           protein F31A3.5 protein.
          Length = 711

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = -1

Query: 224 VRERVHQPR--DELRRERYYEAVGDDAE-LADG 135
           VRER+ Q    D+ RRE YY  +G++ E +A+G
Sbjct: 369 VRERLRQQGQLDQPRREHYYSTIGNEYETIANG 401


>AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.3 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 160 VMTLSLPMESRMRYQTPMSVTRCGTGRRKHVRNLRASSRISSTLLISANS 11
           V+ LS+   S   Y T     R G+GR  H   L A   +S +  +S N+
Sbjct: 254 VIPLSIYTVSNANYSTLNYGQRGGSGRSNHYETLNAGPLLSDSYRLSVNN 303


>Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 333 PGKLHMVPPYVELSGGCSSTVMLK 262
           P K  ++PP++EL  G SS V+ K
Sbjct: 486 PDKPDLIPPFIELLHGGSSDVIAK 509


>Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 333 PGKLHMVPPYVELSGGCSSTVMLK 262
           P K  ++PP++EL  G SS V+ K
Sbjct: 486 PDKPDLIPPFIELLHGGSSDVIAK 509


>AF025468-5|AAB71042.1|  390|Caenorhabditis elegans Hypothetical
           protein T27A1.4 protein.
          Length = 390

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 162 NGFIIAFTSEFIPRLVYAFTHGSLEQYVNNTWQ 260
           N  I+  T+ FI RL++   +  ++ Y+   WQ
Sbjct: 55  NSAILVITNIFINRLIWHNNYAEVDLYLRQQWQ 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,450,032
Number of Sequences: 27780
Number of extensions: 122692
Number of successful extensions: 511
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)