Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20512
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73020.1 68414.m08444 expressed protein contains Pfam profile...    46   8e-06
At1g15520.1 68414.m01867 ABC transporter family protein similar ...    29   1.4  
At1g59870.1 68414.m06745 ABC transporter family protein similar ...    27   4.1  
At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    26   9.5  
At2g36380.1 68415.m04464 ABC transporter family protein related ...    26   9.5  

>At1g73020.1 68414.m08444 expressed protein contains Pfam profile
           PF04547: Protein of unknown function, DUF590; expression
           supported by MPSS
          Length = 558

 Score = 46.4 bits (105), Expect = 8e-06
 Identities = 21/58 (36%), Positives = 33/58 (56%)
 Frame = +3

Query: 3   LAPLFALINNVLEMRLDARKFLTCFRRPVPQRVTDIGVWYRILDSIGKLSVITNGFII 176
           LA   A ++NV+E+R +A K L   RRP+P+    IG W  I   +  +S+ TN  ++
Sbjct: 413 LAFALAAVSNVMEIRTNALKLLVTLRRPLPRAAATIGAWLNIWQFLVVMSICTNSALL 470


>At1g15520.1 68414.m01867 ABC transporter family protein similar to
           ABC1 protein GI:14331118 from [Nicotiana
           plumbaginifolia]
          Length = 1423

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 368 HSTWYWHIIGATLAFVVVF 424
           H+ WYW   GA L FVV+F
Sbjct: 747 HAYWYWIGTGALLGFVVLF 765


>At1g59870.1 68414.m06745 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1469

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 362 YAHSTWYWHIIGATLAFVVVF 424
           Y    WYW  +GA L F  +F
Sbjct: 764 YHQKNWYWISVGALLCFTALF 784


>At3g19050.1 68416.m02420 kinesin motor protein-related contains
           Pfam profile: PF00225 Kinesin motor domain; contains
           non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +2

Query: 227 LAGAVRQQHVADFNITVLE 283
           LAG++R++HVAD +I  LE
Sbjct: 620 LAGSLRREHVADASIKKLE 638


>At2g36380.1 68415.m04464 ABC transporter family protein related to
           multi drug resistance proteins and P-glycoproteins
          Length = 1453

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 377 WYWHIIGATLAFVVVF 424
           W+W  IGA L F V+F
Sbjct: 772 WFWICIGALLGFTVLF 787


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,126,925
Number of Sequences: 28952
Number of extensions: 116244
Number of successful extensions: 433
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)