Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20511
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    26   0.25 
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   1.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.1  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 130 LRLEQVLIFSRHNLRVPLSKHIDEY 204
           LR+ Q L+  +++  + L KH+D+Y
Sbjct: 78  LRIYQTLLSGKNHPHIQLPKHVDQY 102


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 581 ILRRHLLVYNWRAFPRFL 528
           +L  H LVYN   F RFL
Sbjct: 99  LLGNHQLVYNCHTFGRFL 116


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/39 (20%), Positives = 16/39 (41%)
 Frame = +2

Query: 533 IEEMLANCKLTDAYEELDKIIDIKTSKICETQGFCDLVH 649
           + +   NCKL       +  ++   +  C+  G C  +H
Sbjct: 319 VNDYHCNCKLGFMGRHCESKVNFCATSPCQNGGVCTTIH 357


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,673
Number of Sequences: 336
Number of extensions: 3519
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)