Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20511
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    29   0.84 
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    27   2.6  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   4.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   4.5  

>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 11/60 (18%)
 Frame = -3

Query: 236 SWDHF--GNILFVYSSICFDSGTLKL*RLK-INTCSR--------RRQPTPDNNKKLKVT 90
           +WD F   N++  Y+++ F+  TL+   +  + TC          RR+PTP + KK K+T
Sbjct: 158 TWDSFVLANVVGNYNTVVFNGITLERSTMHGVETCGGSLQRKKKIRRKPTPSSTKKRKLT 217


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 242 PGSWDHFGNILFV 204
           PG WD  GN+LFV
Sbjct: 111 PGRWDELGNLLFV 123


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 553 IGEHFLDFFEYFLFVASVVL*IAELKMMSCISKSFLCFTITLQSGNA 413
           +G H+L +F    ++   +L    L MMS +S + + F I L SGN+
Sbjct: 848 LGLHYLKYFGSNKYILGSIL----LVMMSQVSLASIHFWIALWSGNS 890


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 223 SEIFCSCIHLYVLIVELLSCDD*KLILAQGVDSQRRIIIK 104
           S+I    +H Y  +  +   DD K +    VD  RR+I+K
Sbjct: 365 SQILPCVLHSYETLTNVFHRDDSKHLYESAVDHGRRLIMK 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,158
Number of Sequences: 5004
Number of extensions: 57015
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)