Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20511
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805...    31   0.87 
08_01_1026 - 10366534-10368021,10368505-10368525                       28   6.1  
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564...    28   8.1  
01_06_0715 + 31416338-31416500,31416601-31416710,31416808-314168...    28   8.1  

>08_02_0094 +
           12277756-12278574,12280314-12280418,12280487-12280543,
           12280969-12281041,12281525-12281703,12281788-12281961,
           12282041-12282326,12282433-12282509,12282599-12282668,
           12282751-12282822,12282920-12283155,12283240-12283374,
           12283466-12283761,12284237-12284408,12284510-12284608,
           12284704-12284835,12284950-12285050,12285426-12285615,
           12285723-12285761
          Length = 1103

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = +3

Query: 414 AFPDCNVIVKHKKDFDIHDIIF----NSAIHNTTEATNKKYSKKSRKCSPIVN*QMPT 575
           A  DCNV  +   D ++ D+I        +H       K Y   + KC+ I+  + PT
Sbjct: 281 ALEDCNVDSESSSDSELDDLILRMHRKEVVHEIKRHLKKSYDFHTSKCTLIIKPKFPT 338


>08_01_1026 - 10366534-10368021,10368505-10368525
          Length = 502

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +3

Query: 312 NQLLPGTCPDKETVLIYANNKRRTIATAKAFVDAAFPDCNVIVKHKKDFDIH 467
           N +   TCP+K TV I    +   +     F+  A   CNV+   +    +H
Sbjct: 309 NNVADNTCPEKGTVDIVVGGEHHAVKQIGEFLGCA--SCNVMATSESGMRLH 358


>04_03_0998 -
           21555696-21556080,21556177-21556254,21556333-21556424,
           21556524-21556620,21557113-21557141,21557620-21557781,
           21557981-21558061,21558156-21558314,21558394-21558510,
           21558598-21558666,21558753-21558831,21560884-21561050,
           21561109-21561229,21561522-21561649,21562293-21562361,
           21562408-21562539,21562619-21562991,21563274-21563398,
           21563500-21563655,21563785-21564198,21564634-21564691,
           21566522-21566648,21568047-21568305,21569005-21569104,
           21569231-21569317,21569454-21569692,21569914-21569999,
           21570409-21570532,21571111-21574332
          Length = 2444

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 441 KHKKDFDIHDIIFNSAIHNTTEATNKKYSKKSRKCS 548
           +HK  FD +D++  + IH  T     ++S++  K S
Sbjct: 876 RHKCKFDDNDLLVTAVIHKLTARYRNRFSRRLAKKS 911


>01_06_0715 +
           31416338-31416500,31416601-31416710,31416808-31416880,
           31416988-31417135,31417867-31418133,31418234-31418576,
           31418665-31418802,31419389-31419514,31419626-31419838,
           31419918-31420164,31420247-31420446,31420538-31420891,
           31420984-31421568
          Length = 988

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 533 IEEMLANCK-LTDAYEELDKIIDIKTSKI 616
           +EE + + K LTDAYE L +II I  +K+
Sbjct: 156 VEEQIMDEKDLTDAYEPLSRIIPISKNKL 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,214,210
Number of Sequences: 37544
Number of extensions: 335617
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)