Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20511
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)                    29   2.7  
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               29   3.6  
SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)                 28   8.3  
SB_44416| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)
          Length = 525

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 459 DIHDIIFNSAIHNTTEATNKKYSKKSRKCSPIVN*QMPTK 578
           D+  + +++ IHNT    +K +SK  ++ + I+N   P K
Sbjct: 217 DVAGVNWDALIHNTENDASKSFSKFFKRLNRIINKHAPVK 256


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 515 QKVLEEIEEMLANCKLTDAYEE-LDKIIDIKTSKICETQG 631
           ++ +EE  E+LAN    ++Y E LDK ++ K  + C   G
Sbjct: 207 REFMEEFRELLANQSCVESYVEWLDKTVEQKVIQSCVESG 246


>SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 521 VLEEIEEMLANCKLTDAYEELDKIIDIKTSKICE---TQGFCDLVHDKNIVILSRWRRT 688
           V+ E +E  A+    D+Y+ LDK IDI + K  +    QGF +      + +  R+ +T
Sbjct: 162 VVHEAQEPCAHTYEPDSYDYLDKRIDILSKKCVDELKKQGFKEKYISTEVFLHMRYDKT 220


>SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)
          Length = 1736

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +1

Query: 451 RILIYMTSSSILLFITPPKLQTKSTRRNRGNARQL*TNRCLRRIRQDYRHKNL*NMRNSR 630
           R  +Y T+  IL    PP L T  +R+ +    +L     L R + D+R K   N     
Sbjct: 140 RFHVYFTTRRILYEQAPPFLATARSRKKKAAFERLCIEFGLPR-KPDFRWKGGRNHGLGD 198

Query: 631 ILRFGPRQEYCN 666
           +  F P++ Y N
Sbjct: 199 VFVFYPKEGYRN 210


>SB_44416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 290 IFAHMTFQ*GSFSVSMPGSWDHFGN 216
           I  +MT Q  + S S+PG WDH GN
Sbjct: 71  ITLNMTIQ--AISTSLPGIWDHPGN 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,558,446
Number of Sequences: 59808
Number of extensions: 418152
Number of successful extensions: 926
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)