Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20511
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81496-7|CAB04073.1|  301|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC024882-13|AAF60926.1|  342|Caenorhabditis elegans Seven tm rec...    28   5.5  
Z27079-8|CAA81595.2|  798|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U37429-4|AAA79348.1|  244|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF100307-7|AAC68934.1|  353|Caenorhabditis elegans Hypothetical ...    28   7.3  
AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical ...    28   7.3  

>Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical
           protein F55B12.6 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 275 SYERISNEMDERESTFTRNVSRQ 343
           SY RI+N  +E ES FT+N+ +Q
Sbjct: 241 SYRRIANLQNEGESEFTKNLQKQ 263


>Z81496-7|CAB04073.1|  301|Caenorhabditis elegans Hypothetical
           protein F09C6.6 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 348 TVLIYANNKRRTIATAKAFVDAAFPDCNVIVKHKKDFDIHDII 476
           T+++Y + +R+     K FV  A  D  + +KH     I+D +
Sbjct: 78  TIVLYDDGERKLRIEKKHFVGIALCDLRIFLKHASMLTIYDYL 120


>AC024882-13|AAF60926.1|  342|Caenorhabditis elegans Seven tm
           receptor protein 164 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +2

Query: 275 SYERISNEMDERESTFTRNVSRQ 343
           SY+RI++ +DE +S FTRN+  Q
Sbjct: 226 SYKRITSLIDEGQSEFTRNLQIQ 248


>Z27079-8|CAA81595.2|  798|Caenorhabditis elegans Hypothetical
           protein T05G5.8 protein.
          Length = 798

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 261 ALLEGHMSEYLTKWMRENQLLPGTCPDKETVLIYANNK 374
           A LEG++ E   KW  E QL        E V+IYA+N+
Sbjct: 230 AALEGNVKENFVKWFIEQQL-------SEYVIIYADNE 260


>U37429-4|AAA79348.1|  244|Caenorhabditis elegans Hypothetical
           protein F09E5.8 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 476 LQFCYS*HHRSYKQKVLEEIEE---MLANCKLTDAYEELDKIIDIKTSKICETQG 631
           ++ CYS + R + +  ++E+EE   +LA+  L   +  + ++   K  KIC + G
Sbjct: 44  IEACYSQNQRHFGENYVQELEEKSDVLASKCLDIRWHFIGQVQSNKIGKICNSPG 98


>AF100307-7|AAC68934.1|  353|Caenorhabditis elegans Hypothetical
           protein T12B5.10 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 366 NNKRRTIATAKAFVDAAFPDCNVIVKHKKDFDIHDIIFN 482
           +N ++TI   + FV+ A  D  ++ KH +  DI +   N
Sbjct: 132 HNGQKTIIAEENFVERAAKDFKILSKHARKIDIRNFTEN 170


>AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical
           protein Y49C4A.1 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 487 AELKMMSCISKSFLCFTITLQSGNAASTNAFAVAM 383
           A LK++ C+ +SF+  TI L   N++S  +  +A+
Sbjct: 254 AYLKIIGCVIESFIVTTILLFGQNSSSVRSTTIAV 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,428,166
Number of Sequences: 27780
Number of extensions: 320486
Number of successful extensions: 936
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)