Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20511
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20610.1 68414.m02575 cyclin, putative similar to G2/mitotic-...    29   3.9  
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ...    28   5.1  
At5g53060.1 68418.m06592 KH domain-containing protein                  28   6.8  
At3g24715.1 68416.m03103 octicosapeptide/Phox/Bem1p (PB1) domain...    28   6.8  
At2g02090.1 68415.m00145 SNF2 domain-containing protein / helica...    28   6.8  
At3g21250.1 68416.m02685 ABC transporter family protein similar ...    27   8.9  

>At1g20610.1 68414.m02575 cyclin, putative similar to
           G2/mitotic-specific cyclins (B-like cyclin) from
           {Medicago varia} SP|P46278, SP|P46277; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 429

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 509 YKQKVLEEIEEMLANCKLTDAYEELDKIIDIKTSKICETQGFCDLVHD 652
           + + +LEEIE+M    ++ DA +E + +IDI            + +HD
Sbjct: 133 HTEAMLEEIEQMEKEIEMEDADKEEEPVIDIDACDKNNPLAAVEYIHD 180


>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
           similar to root phototropism RPT2 [Arabidopsis thaliana]
           gi|6959488|gb|AAF33112, a signal transducer of
           phototropic response PMID:10662859
          Length = 526

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 467 MYIKILFMLHDYIAVRECGIDKCLRS-SYGSSLIIRINQNGFFVGTRSG*KLIL 309
           M  K+ F+LH +  V +CG  K L S S   S IIRI     F G   G +L++
Sbjct: 1   MLEKLSFLLHKFPLVSKCGFIKKLASESSNDSNIIRIPD---FPGGAEGFELVI 51


>At5g53060.1 68418.m06592 KH domain-containing protein 
          Length = 652

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 234 RAGHADGKGALLEGHMSEYLTKWMRENQLLPGTCPDKETVLIYANNKRR 380
           +AG   GK   +   + ++   W+  ++L+PG   D E ++  ++N+RR
Sbjct: 78  KAGGVIGKSGTIIKSIRQHTGAWINVHELVPG---DAERIIEISDNRRR 123


>At3g24715.1 68416.m03103 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein  contains Pfam profile
           PF00564: PB1 domain
          Length = 756

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 542 FPRFLRVLFVCSFGGVMNSRIEDD 471
           F RF +V F+CSFGG +  R  D+
Sbjct: 170 FDRFGKVKFLCSFGGRIMPRSTDE 193


>At2g02090.1 68415.m00145 SNF2 domain-containing protein / helicase
           domain-containing protein similar to transcriptional
           activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 763

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 438 VKHKKDFDIHDIIFNSAIHNTTEATNKKYSKKSRKC 545
           VK   DF IH ++F   +++T    + K+   S KC
Sbjct: 555 VKGFNDFRIHQLLFQYGVNDTKGTLSDKHVMLSAKC 590


>At3g21250.1 68416.m02685 ABC transporter family protein similar to
           MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
           thaliana]
          Length = 1294

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -3

Query: 533 FLRVLFVCSFGGVMNSRIEDDVMYIKILFMLHDYIAVRECGIDKCLRSSYGSSLIIRINQ 354
           F  + +V     + +  I D+++Y K +       A++ C +DK + + +G   +  I Q
Sbjct: 501 FGSIAYVSQTSWIQSGTIRDNILYGKPMESRRYNAAIKACALDKDM-NGFGHGDLTEIGQ 559

Query: 353 NG 348
            G
Sbjct: 560 RG 561


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,240,562
Number of Sequences: 28952
Number of extensions: 286325
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)