Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20510
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    27   2.5  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    26   4.4  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    26   5.8  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    26   5.8  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   7.7  

>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 606 ERLEDLVKSTSLKVHCK*NRIRG 538
           + ++DL+K  SL VHC  +++RG
Sbjct: 55  QHVDDLMKKRSLIVHCTYSQVRG 77


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 395 LKERVVPNVGIKSTSRENAPFRTRRNGKPHACRPATPTP 511
           L+++++  +G KS + E+   + RRNG+P     A   P
Sbjct: 34  LRKKIISELGKKSGNFESPVRKIRRNGEPGTVDSAALDP 72


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 91  LKYNRSSHEILR*SRISVLMQEVVTFMDHLLFYRERE 201
           L Y +  H+I +   +++     +  M+HL+FYR R+
Sbjct: 114 LCYYQGLHDIAQILLLTLPFSHALPLMEHLVFYRLRD 150


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 428 KSTSRENAPFRTRRNGKPHACR 493
           +S+ R +  F+ RRNGKP   R
Sbjct: 234 RSSVRRSQSFKNRRNGKPRISR 255


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +1

Query: 265 LTVMVVASLVPAIQARARRYSRMQPNALSKTRCDLMCFDRDKETKGTC 408
           +TV   +  +P++    + + +M PNAL          + D ET   C
Sbjct: 225 ITVTEYSETIPSLWPSTKEFIKMHPNALHPNNALNFISNDDGETYNGC 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,209
Number of Sequences: 5004
Number of extensions: 57040
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)