Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20510
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230... 35 0.069
10_08_0513 + 18460095-18460170,18460362-18460441,18461029-184614... 31 0.84
05_04_0236 + 19301730-19302222,19302308-19302440,19302640-19303036 31 0.84
02_01_0538 + 3932581-3932632,3933014-3933219 29 4.5
01_07_0042 + 40697153-40697407,40697479-40698081 29 4.5
12_01_0550 - 4411926-4412207,4414661-4414774 28 7.9
06_02_0136 + 12195422-12195435,12196047-12196122,12196896-121977... 28 7.9
04_04_0789 - 28068819-28068989,28069081-28069477,28069857-280700... 28 7.9
02_05_0422 - 28831195-28831254,28831345-28831833,28831924-288320... 28 7.9
>06_03_0611 -
22721977-22722276,22722765-22722853,22722978-22723083,
22723178-22723306,22723803-22723887,22723994-22724103,
22724424-22724624,22725033-22725394,22725612-22725695,
22725791-22725916,22725999-22726161,22726378-22726536,
22727147-22727274,22727371-22727493,22727755-22727899,
22727992-22728068,22728318-22728696,22729325-22729411
Length = 950
Score = 34.7 bits (76), Expect = 0.069
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +1
Query: 211 KQNLFVFGENELKNAMRLLTVMVVASLVPAIQARARRYSRMQPNALSKTRCDLMCFDRDK 390
++NL +F + K +RL+ V + L+ I R +P K RC C D +
Sbjct: 23 RKNL-IFQKRNRKGTIRLIIVPIYLCLLLTILQRVINSVLDKP----KFRCGCKCVDVNG 77
Query: 391 ETKGTCRSQCRNQEH---KPGKCPVSDTPKWEA 480
G+C++ C Q + G CP+ + P+W A
Sbjct: 78 T--GSCQNVCGIQYSTLDQAGSCPIPNPPEWPA 108
>10_08_0513 +
18460095-18460170,18460362-18460441,18461029-18461491,
18461914-18462073,18462177-18462451,18462634-18462801,
18463012-18463064
Length = 424
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +1
Query: 322 YSRMQPNALSKTRCDLMCFDRDKETK-GTCRSQCRNQEHKPGKCPVSDTP 468
YS+ + L FD DK TC CRN++ GKC + P
Sbjct: 215 YSQFLAQKVPSCCVSLSSFDNDKTVDCPTCSCGCRNEKSTTGKCVKKNAP 264
>05_04_0236 + 19301730-19302222,19302308-19302440,19302640-19303036
Length = 340
Score = 31.1 bits (67), Expect = 0.84
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 244 LKNAMRLLTVMVVASLVPAIQARARRYSRMQ-----PNALSKTRCDLMCFDRDKETKGTC 408
L+ AM+ L + V+A A ARA + R PN L +R C D KG C
Sbjct: 9 LQVAMKALALAVLALAYAAATARAEQCGRQAGGARCPNRLCCSRWG-WCGLTDDYCKGGC 67
Query: 409 RSQCR 423
+SQCR
Sbjct: 68 QSQCR 72
>02_01_0538 + 3932581-3932632,3933014-3933219
Length = 85
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Frame = +1
Query: 370 MCFDRDKETKG------TCRSQCRNQEHKPGKCPVSDTPKWEAACVQACNSDS 510
MC DR + KG C + C N+ + G C T + C + C DS
Sbjct: 26 MCHDRSQTFKGMCFRTSNCNTSCTNEGYTGGHC---TTFRRRCVCTKECGGDS 75
>01_07_0042 + 40697153-40697407,40697479-40698081
Length = 285
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = -3
Query: 631 FSFGSSIVGTAGRPGKVNKSKGSLQVEPHPW*--QHLCVPSHWSRSCRPARMRLPISACP 458
F+ S V A ++ S +Q+ P P Q V HW SC P R R CP
Sbjct: 33 FNISDSKVVAADASAAISGSMDWIQL-PSPMFNFQASSVAHHWEISCFPLRGR---EGCP 88
Query: 457 KRGIFPACALDSDIGNDT 404
P+ +D D G+ T
Sbjct: 89 ISLFVPSTNVDDDDGDGT 106
>12_01_0550 - 4411926-4412207,4414661-4414774
Length = 131
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Frame = +1
Query: 139 SVLMQEVVTFMDHLLFYREREMC*KQNLFVFGENELKNAMRLLTV-MVVASLVPAIQARA 315
S+ M+ +D L F RE L+V + A+R+ T + L
Sbjct: 21 SIEMEPKTLTLDQLKFAREAA------LYVLSTKPAEEAIRIFTEGLKPVHLAAGCGGGG 74
Query: 316 RRYSRMQPNALSKTRCDLMCFDRDKETKGTCR 411
R+ S M ++ S D+ CF D K CR
Sbjct: 75 RKSSTMAADSSSDDDLDIGCFHDDYAGKSYCR 106
>06_02_0136 +
12195422-12195435,12196047-12196122,12196896-12197707,
12197941-12198010,12199469-12199557,12199633-12199666
Length = 364
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 524 CAVALESELQACTHAASHFGV-SETGHFPGLCS*FRHWERHVPLVSLSLSKHIRS 363
C+V L+ L T A FG+ SE H P S R+W + P + ++ +R+
Sbjct: 212 CSVCLDRVLSKPTAAERKFGLLSECDH-PFCISCIRNWRNNSPTSGMDVNSALRA 265
>04_04_0789 -
28068819-28068989,28069081-28069477,28069857-28070009,
28070698-28070834
Length = 285
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 392 KLKERVVPNVGIKSTSRENAPFRTRRNG-KPHACRPATPTPMRRH 523
+L++R + + GI+++ R T +NG KPH C P +P RRH
Sbjct: 81 ELEQRPLMDYGIEASER------TSKNGPKPH-CTPPSPPKHRRH 118
>02_05_0422 -
28831195-28831254,28831345-28831833,28831924-28832052,
28832179-28832538
Length = 345
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Frame = -2
Query: 563 TASRTASVVTAPLCAVALESELQACTHAASHFGV--SETGHFPGL---CS*FRHWERHVP 399
T S A+ A A + A A+S++G+ S+ G+ S FR WE + P
Sbjct: 68 TGSTAAAKAEATKAAKEGPASATASPVASSYWGIEASKLASKDGVEWKWSCFRPWETYSP 127
Query: 398 LVSLSLSKHIRSHLVFDKALGCILEYLR 315
++ L KH ++ DK ++ LR
Sbjct: 128 DTTIDLKKHHEPKVLLDKVAYWTVKALR 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,774,028
Number of Sequences: 37544
Number of extensions: 407073
Number of successful extensions: 1335
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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