Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20510
(681 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 41 0.001
SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0) 37 0.013
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 33 0.28
SB_19545| Best HMM Match : VWA (HMM E-Value=0.00034) 31 0.65
SB_32705| Best HMM Match : VWA (HMM E-Value=2e-27) 30 1.5
SB_38537| Best HMM Match : VWA (HMM E-Value=0) 29 2.6
SB_40740| Best HMM Match : DctM (HMM E-Value=6.2) 29 3.5
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38) 29 4.6
SB_36080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_45184| Best HMM Match : C2 (HMM E-Value=1.1e-22) 28 6.1
SB_43325| Best HMM Match : C2 (HMM E-Value=1.1e-22) 28 6.1
SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 28 6.1
SB_41604| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_21841| Best HMM Match : WD40 (HMM E-Value=0.00078) 28 6.1
SB_6259| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1120
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 513 CDGTQRCCHHGCGSTCSEPLDLLTLPGLPAVPTMEEPKE 629
C G ++CC +GCG TC+ P+ G P V + +P E
Sbjct: 591 CAGDKKCCSNGCGRTCTSPVRQACPEGQPVVMCLRDPCE 629
>SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)
Length = 808
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +1
Query: 229 FGENELKNAMRLLTVMVVASLVPAIQARARRYSRMQPNALSKTRC 363
FG + LK L V +PA Q R RY R+Q N L+K+RC
Sbjct: 63 FGVDVLKTGGAKLIVHQCEGFLPAKQQRQNRYQRLQHNELTKSRC 107
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 477 SRMRAGLQLRLQCDGTQRCCHHGCGSTCSEP-LDLLTLP 590
SR R L C G Q+CC GC C+ P LD++ P
Sbjct: 1569 SRSRPKCLLDSDCPGNQKCCSDGCTMICTNPDLDIVNAP 1607
Score = 35.1 bits (77), Expect = 0.053
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 441 GKMPRFGH-AEMGSRMRAGLQLRLQCDGTQRCCHHGCGSTCSE 566
G P+ A G MR + C GTQ+CC +GC C++
Sbjct: 1680 GNCPKLTRPAVCGEVMRTECNYDIDCAGTQKCCSNGCRRLCAD 1722
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 33.5 bits (73), Expect = 0.16
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 507 LQCDGTQRCCHHGCGSTCSEPLDL 578
L C G +RCC++GC C P+ L
Sbjct: 758 LDCPGKRRCCYNGCNHECLIPIKL 781
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 423 ESRAQAGKMPRFGHAEMGSRMRAGLQLRLQCDGTQRCCHHGCGSTCSEP 569
++R++A P G + RM + +C QRCC +GC C +P
Sbjct: 1000 DNRSEACPAPWKGLDGICDRMGDQCKSDSECRPNQRCCFNGCQKQCIKP 1048
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 423 ESRAQAGKMPRFGHAEMGSRMRAGLQLRLQCDGTQRCCHHGCGSTCSEP 569
++R++A P G + RM Q +C Q+CC +GC C +P
Sbjct: 1055 DNRSEACPAPWKGLDGICDRMGDQCQSDSECRPNQQCCFNGCQKQCIKP 1103
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +3
Query: 510 QCDGTQRCCHHGCGSTCSEPLDLLTLPGLPAVPTME 617
QC G +CC +GC C D L P P P E
Sbjct: 1669 QCPGQHKCCFNGCQKDCVLMTDALVCP-KPCGPNAE 1703
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 480 RMRAGLQLRLQCDGTQRCCHHGCGSTCSEP 569
RM Q ++C Q+CC +GC C +P
Sbjct: 964 RMGDQCQSDIECRPNQQCCFNGCQKQCIKP 993
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/63 (22%), Positives = 23/63 (36%)
Frame = +3
Query: 405 VSFPMSESRAQAGKMPRFGHAEMGSRMRAGLQLRLQCDGTQRCCHHGCGSTCSEPLDLLT 584
+ PM+ + + + + R Q C G ++CC GC C E +
Sbjct: 779 IKLPMARPKPGICPIQDYIDPSLCKSTRDECQTDADCFGRRKCCFSGCAMECMETPGSIP 838
Query: 585 LPG 593
PG
Sbjct: 839 RPG 841
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 352 KTRCDLMCFDRDKETKGTCRSQCRNQEHKPGKCPVSDTPKWEAAC-VQACNSDS 510
KT CD + R+ TK C+ + + E KC DT W+ ++ C S+S
Sbjct: 1077 KTNCDSVASSRESRTKNECQIKTESGEKCESKCCAEDT--WKGGVKLENCVSES 1128
>SB_19545| Best HMM Match : VWA (HMM E-Value=0.00034)
Length = 286
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +3
Query: 459 GHAEMGSRMRAGLQLRLQCDGTQRCC--HHGCGSTCSEP 569
G + G R + C G QRCC GC S C EP
Sbjct: 134 GESVAGKEGRTDKENDWDCPGEQRCCKSDDGCHSVCKEP 172
>SB_32705| Best HMM Match : VWA (HMM E-Value=2e-27)
Length = 316
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = +3
Query: 459 GHAEMGSRMRAGLQLRLQCDGTQRCC--HHGCGSTCSEP 569
G + G R C G QRCC GC S C EP
Sbjct: 210 GESVAGKEGRTDKANDWDCPGEQRCCKSDDGCHSVCKEP 248
>SB_38537| Best HMM Match : VWA (HMM E-Value=0)
Length = 1174
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = +3
Query: 513 CDGTQRCCHH--GCGSTCSEP 569
C G Q+CC H GC C+EP
Sbjct: 757 CPGEQKCCLHSDGCHFVCAEP 777
>SB_40740| Best HMM Match : DctM (HMM E-Value=6.2)
Length = 543
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 451 PVSDTPKWEAACVQACNSDSNATAHRGAVTTDAVLL 558
P+ +TP C Q N + NAT H+ + D + L
Sbjct: 58 PLKETPTASHRCAQLGNQERNATGHKRDLPDDEIQL 93
>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
Length = 667
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +3
Query: 516 DGTQRCCHHGCGSTCSEPLDLLT--LPGLPAVPT 611
D ++CC +GC S C P+ T LP PT
Sbjct: 156 DSDKKCCDNGCTSVCVPPVTQQTTALPTSKRTPT 189
>SB_36080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 426 SRAQAGKMPRFGHA-EMGSRMRAGLQLRLQCDGTQRCCHHGCGSTCSEPL 572
S A+ G+ P+ HA + R ++ C G ++CC C ++C P+
Sbjct: 65 SGAKRGRCPQTLHAADYCLRGKSTCNTDEDCPGPKKCCDQSCVTSCVLPV 114
>SB_45184| Best HMM Match : C2 (HMM E-Value=1.1e-22)
Length = 344
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 364 DLMCFDRDKETKGTCRSQCRNQEHKPGKCPVSDTPKWEA 480
DL D + C +QEHK CP + PKW +
Sbjct: 278 DLKSSDPSGMSDPYCEVSMGSQEHKTRVCPQTLNPKWNS 316
>SB_43325| Best HMM Match : C2 (HMM E-Value=1.1e-22)
Length = 87
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 364 DLMCFDRDKETKGTCRSQCRNQEHKPGKCPVSDTPKWEA 480
DL D + C +QEHK CP + PKW +
Sbjct: 21 DLKSSDPSGMSDPYCEVSMGSQEHKTRVCPQTLNPKWNS 59
>SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 364 DLMCFDRDKETKGTCRSQCRNQEHKPGKCPVSDTPKWEA 480
DL D + C +QEHK CP + PKW +
Sbjct: 234 DLKSSDPSGMSDPYCEVSMGSQEHKTRVCPQTLNPKWNS 272
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 364 DLMCFDRDKETKGTCRSQCRNQEHKPGKCPVSDTPKWEA 480
DL D + C +QEHK CP + PKW +
Sbjct: 943 DLKSSDPSGMSDPYCEVSMGSQEHKTRVCPQTLNPKWNS 981
>SB_41604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 406
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 364 DLMCFDRDKETKGTCRSQCRNQEHKPGKCPVSDTPKWEA 480
DL D + C +QEHK CP + PKW +
Sbjct: 278 DLKSSDPSGMSDPYCEVSMGSQEHKTRVCPQTLNPKWNS 316
>SB_21841| Best HMM Match : WD40 (HMM E-Value=0.00078)
Length = 360
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = +3
Query: 426 SRAQAGKMPRFGHAEMGSRMRAGLQLRLQCDGTQRCCHHGCGSTCSEPLDLLTLPGLPAV 605
SR G+ E+ S G + + R H C S DL TL LP
Sbjct: 208 SRESVGQEDEDKEPELPSESEVGEEEEVDVTSIDRI-HALCSSDEDNDQDLDTLSYLPVA 266
Query: 606 PTMEEPKE 629
P +++P+E
Sbjct: 267 PEVDDPEE 274
>SB_6259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 439
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 507 LQCDGTQRCCHHGCGSTCSEPLDLLTLP 590
+ C+ T +CC +GC TC+ P ++ P
Sbjct: 86 VDCNETDKCCFNGCILTCT-PATFISKP 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,774,642
Number of Sequences: 59808
Number of extensions: 477678
Number of successful extensions: 1529
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -