Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20510
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92828-7|CAE48500.1| 700|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81561-2|CAB04551.2| 700|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AF342986-1|AAL73338.1| 700|Caenorhabditis elegans KAL-1 protein. 44 1e-04
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 37 0.015
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 31 1.0
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ... 31 1.0
Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical p... 29 2.3
Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical p... 29 2.3
Z73428-2|CAA97806.2| 572|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 27 9.4
U49830-7|AAM98046.1| 774|Caenorhabditis elegans Neuronal igcam ... 27 9.4
U49830-6|AAK31481.1| 964|Caenorhabditis elegans Neuronal igcam ... 27 9.4
U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam ... 27 9.4
U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam ... 27 9.4
>Z92828-7|CAE48500.1| 700|Caenorhabditis elegans Hypothetical
protein K03D10.1 protein.
Length = 700
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = +3
Query: 498 QLRLQCDGTQRCCHHGCGSTCSEP--LDLLTLPGLPAVPTMEEPKEKRRAVVLRWSDG 665
Q+ +C TQ+CC GC C +P D+ LP +P +++E K K R++++RW+ G
Sbjct: 123 QMDGECPETQKCCSSGCSRQCLKPRSSDIKLLP-IPRNISVQERKRK-RSIIIRWATG 178
>Z81561-2|CAB04551.2| 700|Caenorhabditis elegans Hypothetical
protein K03D10.1 protein.
Length = 700
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = +3
Query: 498 QLRLQCDGTQRCCHHGCGSTCSEP--LDLLTLPGLPAVPTMEEPKEKRRAVVLRWSDG 665
Q+ +C TQ+CC GC C +P D+ LP +P +++E K K R++++RW+ G
Sbjct: 123 QMDGECPETQKCCSSGCSRQCLKPRSSDIKLLP-IPRNISVQERKRK-RSIIIRWATG 178
>AF342986-1|AAL73338.1| 700|Caenorhabditis elegans KAL-1 protein.
Length = 700
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = +3
Query: 498 QLRLQCDGTQRCCHHGCGSTCSEP--LDLLTLPGLPAVPTMEEPKEKRRAVVLRWSDG 665
Q+ +C TQ+CC GC C +P D+ LP +P +++E K K R++++RW+ G
Sbjct: 123 QMDGECPETQKCCSSGCSRQCLKPRSSDIKLLP-IPRNISVQERKRK-RSIIIRWATG 178
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 36.7 bits (81), Expect = 0.015
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 507 LQCDGTQRCCHHGCGSTCSEPL 572
L C +CC + CGSTC EPL
Sbjct: 223 LDCGSVDKCCQNACGSTCMEPL 244
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 510 QCDGTQRCCHHGCGSTCSEPLD-LLTLPGLPAVPTM 614
+C ++CC +GC +C++P D +L P P P M
Sbjct: 459 ECSEDEKCCFNGCTLSCTQPEDYVLKKPLKPIEPVM 494
Score = 33.1 bits (72), Expect = 0.19
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 510 QCDGTQRCCHHGCGSTCSEPL 572
QC G +RCC GC ++C P+
Sbjct: 535 QCAGMKRCCRQGCSTSCMYPV 555
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +3
Query: 447 MPRFG-HAEMGSRMRAGL-QLRLQ----CDGTQRCCHHGCGSTCSEPL 572
+P+FG + E R+ G+ LR + C G CC +GCG C P+
Sbjct: 81 IPKFGSNREECPRLTGGICALRCEKDSDCSGRLICCSNGCGRECVAPI 128
Score = 30.7 bits (66), Expect = 1.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 513 CDGTQRCCHHGCGSTCSE 566
C G Q+CC GCG+ C +
Sbjct: 762 CSGHQKCCFDGCGAGCRD 779
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 513 CDGTQRCCHHGCGSTC 560
C T +CC +GCG TC
Sbjct: 1048 CGQTSKCCWNGCGLTC 1063
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 513 CDGTQRCCHHGCGSTCSEP 569
C G +CC CG+ CS P
Sbjct: 1451 CHGFLKCCQASCGTMCSAP 1469
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 513 CDGTQRCCHHGCGSTCSEPL 572
C G +CC GC C+ PL
Sbjct: 820 CAGVAKCCDDGCVKACAYPL 839
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 431 STSRENAPFRTRRNGKPHACRPATPTPMRRHTEVLSPRMRF 553
ST +E++PF + P P TP P + E SP +F
Sbjct: 48 STQKESSPFTDFDDVPPPPVAPETPAPAQNRRESASPERQF 88
>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
protein Y38C1AB.4 protein.
Length = 1393
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 431 STSRENAPFRTRRNGKPHACRPATPTPMRRHTEVLSPRMRF 553
ST +E++PF + P P TP P + E SP +F
Sbjct: 48 STQKESSPFTDFDDVPPPPVAPETPAPAQNRRESASPERQF 88
>Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical
protein K08E3.3b protein.
Length = 610
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 479 PHACRPATPTPMRRHTEVLSPRM 547
P + +TPTP+RR E+ SP++
Sbjct: 503 PKTSKSSTPTPLRRRAEISSPKI 525
>Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical
protein K08E3.3a protein.
Length = 608
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 479 PHACRPATPTPMRRHTEVLSPRM 547
P + +TPTP+RR E+ SP++
Sbjct: 503 PKTSKSSTPTPLRRRAEISSPKI 525
>Z73428-2|CAA97806.2| 572|Caenorhabditis elegans Hypothetical
protein M142.2 protein.
Length = 572
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +3
Query: 501 LRLQCDGTQRCCHHGCGSTCSEPLDLLTLPGLPAVPTMEEPKEKRRAVVLRWSDGVG 671
L+ QC T + G + P + LPG P EKRR +V R +DGVG
Sbjct: 456 LQFQCQITLCLKYDGGCEGITPPQNCKKLPGEDGHHHHHHP-EKRRKLVRRLADGVG 511
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 403 TCRSQCRNQ--EHKPGKCPVSDTPKWEAACVQACNSDSNATAHRGAVTTDAVLLAVNL*T 576
TC+S+C N+ P P AC +C+S ATA + T + A+ T
Sbjct: 269 TCQSRCENRCLSTCTASQPSVCAPSCSTACQLSCDSIGAATAPQSTNPTPVEVRALCTPT 328
Query: 577 C 579
C
Sbjct: 329 C 329
>U49830-7|AAM98046.1| 774|Caenorhabditis elegans Neuronal igcam
protein 6, isoform c protein.
Length = 774
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +3
Query: 459 GHAEMGSRMRAGLQLRLQCDGTQRCCHHGCGSTCSEPLDLLTLPGLPA-----VPTMEEP 623
GH + + L++ G+++ C S + +T P LP+ V M+E
Sbjct: 267 GHKGRHLKQKVDLEVPKSLAGSRQIGRFACSSLYGGSSEFVTKPQLPSPIALTVEQMDED 326
Query: 624 KEKRRAVVLRW 656
+K++ LRW
Sbjct: 327 GKKKKMFRLRW 337
>U49830-6|AAK31481.1| 964|Caenorhabditis elegans Neuronal igcam
protein 6, isoform a protein.
Length = 964
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +3
Query: 459 GHAEMGSRMRAGLQLRLQCDGTQRCCHHGCGSTCSEPLDLLTLPGLPA-----VPTMEEP 623
GH + + L++ G+++ C S + +T P LP+ V M+E
Sbjct: 457 GHKGRHLKQKVDLEVPKSLAGSRQIGRFACSSLYGGSSEFVTKPQLPSPIALTVEQMDED 516
Query: 624 KEKRRAVVLRW 656
+K++ LRW
Sbjct: 517 GKKKKMFRLRW 527
>U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam
protein 6, isoform b protein.
Length = 1227
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +3
Query: 459 GHAEMGSRMRAGLQLRLQCDGTQRCCHHGCGSTCSEPLDLLTLPGLPA-----VPTMEEP 623
GH + + L++ G+++ C S + +T P LP+ V M+E
Sbjct: 720 GHKGRHLKQKVDLEVPKSLAGSRQIGRFACSSLYGGSSEFVTKPQLPSPIALTVEQMDED 779
Query: 624 KEKRRAVVLRW 656
+K++ LRW
Sbjct: 780 GKKKKMFRLRW 790
>U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam
protein 6, isoform d protein.
Length = 1196
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +3
Query: 459 GHAEMGSRMRAGLQLRLQCDGTQRCCHHGCGSTCSEPLDLLTLPGLPA-----VPTMEEP 623
GH + + L++ G+++ C S + +T P LP+ V M+E
Sbjct: 689 GHKGRHLKQKVDLEVPKSLAGSRQIGRFACSSLYGGSSEFVTKPQLPSPIALTVEQMDED 748
Query: 624 KEKRRAVVLRW 656
+K++ LRW
Sbjct: 749 GKKKKMFRLRW 759
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,820,986
Number of Sequences: 27780
Number of extensions: 340465
Number of successful extensions: 939
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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