Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20510
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.2  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 511 WSRSCRPARMRLPISACPKR 452
           WSR  R A +R+  + CP R
Sbjct: 393 WSRDFRRAFVRILCACCPGR 412


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 494 PATPTPMRRHTEVLSPRMRFY 556
           P T T + +H++  SP++R Y
Sbjct: 211 PVTLTTVPKHSKTKSPKLRPY 231


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 371 CALTGIRKLKERVVPNVGIKSTSRENAPFRTRRNGKP 481
           CA+ G   LKER   N   K  S + +    +R+G+P
Sbjct: 30  CAVYGDEALKERQCQNWFDKFRSGDFSLKDEKRSGRP 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,183
Number of Sequences: 438
Number of extensions: 4135
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)