Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20510
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein...    28   5.0  
At3g06640.1 68416.m00772 protein kinase family protein contains ...    28   6.6  
At1g09490.1 68414.m01063 cinnamyl-alcohol dehydrogenase family /...    27   8.7  

>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 268

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/59 (22%), Positives = 23/59 (38%)
 Frame = +1

Query: 349 SKTRCDLMCFDRDKETKGTCRSQCRNQEHKPGKCPVSDTPKWEAACVQACNSDSNATAH 525
           SKT    +C ++ +  +     QCR + H    CP  +    E      C    ++ +H
Sbjct: 81  SKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSH 139


>At3g06640.1 68416.m00772 protein kinase family protein contains
           Serine/Threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 763

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/60 (28%), Positives = 23/60 (38%)
 Frame = +1

Query: 322 YSRMQPNALSKTRCDLMCFDRDKETKGTCRSQCRNQEHKPGKCPVSDTPKWEAACVQACN 501
           Y      A+ +   D+M  DRD     T    C N E   GK PV      + + V  C+
Sbjct: 97  YGYSAAEAVGQNPIDVMVDDRDAPFAMTIAQLCSNGESWTGKFPVKRRTGEKFSAVTTCS 156


>At1g09490.1 68414.m01063 cinnamyl-alcohol dehydrogenase family /
           CAD family similar to cinnamyl alcohol dehydrogenase,
           Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
           unguiculata [gi:1854445]; Location of EST gb|H37170,
           gb|H77227 and gb|AA605565
          Length = 322

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 507 LQCDGTQRCCHHGCGSTCSEPLDLLTLPGLPAVPTMEEPKEKRRAVVLRWSDG 665
           + C G   C     G   S  + LL L G     T+ +PK+K++   L   DG
Sbjct: 1   MNCGGKVVCVTGASGYIASWIVKLLLLRGYTVNATVRDPKDKKKTEHLLALDG 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,875,236
Number of Sequences: 28952
Number of extensions: 314128
Number of successful extensions: 839
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)