Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20509
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    29   0.48 
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    29   0.64 
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    28   1.5  
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    27   1.9  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    27   1.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    27   3.4  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   3.4  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   7.9  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   7.9  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    25   7.9  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = -1

Query: 569 LFYDQSIAPWDQDADDLQCTNSAIKEISSECFTVNTHQCLSDSSAVF---FWRNIDVILI 399
           L+Y +++     DA  + C  S++ ++SS C ++N+    SD+  V     +  ID + +
Sbjct: 57  LWYREAMMSDANDACQIACQESSVPDLSSSCDSINS-TVESDAGHVVDSNSFNRIDNVSV 115

Query: 398 QAPFGSCFNSKIVGKQIQGSTRSTFLR 318
            AP     N   +   ++G + S+ +R
Sbjct: 116 NAPI---VNEVSLQAPMKGGSHSSIVR 139


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 290 DGNSFRKDSSTPRREPRPTTDDASPPPDEWGPSSNFCMRCCTSISP 153
           D  +   + ++ RR      +D+SPP +   PS  FC  C T+ +P
Sbjct: 139 DTTTETSNGTSRRRSSHNQHEDSSPPHE---PSVTFCQNCATTNTP 181


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = -3

Query: 669 KAFPYNDVKDLYIVIVSRLTSQVSLIKIRIRSLSVLRSEYSSMGSGCRRFTVYKQCHQRD 490
           K   +   K+ Y+  VS  +   S I          R  + S+G GC+R  + +Q     
Sbjct: 3   KTVNFRATKNFYLQFVSVSSRDTSCIPCIHLFFDSKRYVFGSVGEGCQRAILSQQLRLSK 62

Query: 489 ILRVFYCEHASV 454
           I  VF  + +S+
Sbjct: 63  IKDVFLMQGSSI 74


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 566 FYDQSIAPWDQDADDLQCTNSAIKEISSECFTVNTHQCLS-DSSAVFFWRNIDV 408
           +Y+   + W+   D +      + + +S  F VN HQ LS D +   FW N ++
Sbjct: 224 YYETLPSLWNVTRDFIHQNPQYLAQNNSLDFIVNDHQGLSGDYNLCHFWSNFEI 277


>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 375 ETTPKWGLYQYHVDISPEEDSTGVRKALMRVHSKTLGG-YLFDGTV 509
           ET+P+   Y   V I PEE  + + K +  +  +  G  Y +DGT+
Sbjct: 205 ETSPEMLTYLKKVTIIPEESVSSMLKVVDNLKPENNGSFYRYDGTI 250


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 334 EVPFLDVTASGRVRKMEIVSGRTLPPPVESHGQLRMMHHHLQMNGVPV 191
           E  F    A  RV+ + +  GR       S+ QL     H+Q++ VPV
Sbjct: 2   EFDFFSFVAPSRVQSLVLPFGRVRRKSFSSYLQLLRRVSHIQLSDVPV 49


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 284 NSFRKDSSTPRREPRPTTDDASPPPDEWGPSS 189
           N+ R+  +    E + TT+D+SPP D    S+
Sbjct: 457 NTLRRTPAKSSEEAKSTTNDSSPPKDSSSTST 488


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 476 FTVNTHQCLSDSSAVFFWRNIDVILIQAPFGSCFNSKI 363
           F   + + + DS   F W  +DV++     G C   KI
Sbjct: 56  FLEKSAKVMYDSPFSFIWVRVDVLVFSPKKGDCLEGKI 93


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 303 DVCARWK*FQEGLFHPPSRATAN 235
           D+C+R+     G+FHP S++T N
Sbjct: 616 DICSRY--LHGGMFHPSSKSTIN 636


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 533 DADDLQCTNSAIKEISSECFTVNTHQCLSDSS 438
           DA    C  S ++EISS  FT +  +  SDS+
Sbjct: 71  DAIVKNCKTSIVREISSRTFTDSLLKIASDST 102


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 69  SSKSWCPDTNSTSGS 113
           S KSW PD NST+ S
Sbjct: 165 SRKSWNPDVNSTTSS 179


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 327 GTSGTPLDLLANYFTVETTPKWGLYQYHV 413
           G  G  + L AN+F + + P   + QYHV
Sbjct: 16  GGLGKQITLKANFFQIISLPNETINQYHV 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,757
Number of Sequences: 5004
Number of extensions: 66534
Number of successful extensions: 192
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)