Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20509
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 38 0.008
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 38 0.010
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 36 0.031
05_04_0146 + 18393447-18394043 33 0.28
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 31 0.66
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561... 31 0.87
07_01_0657 - 4915264-4915386,4915586-4915714,4917773-4917859,491... 29 2.6
02_04_0229 + 21093398-21094423 29 2.6
01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622 29 3.5
09_04_0173 - 15340646-15340743,15341065-15341161 29 4.6
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 29 4.6
04_04_0322 - 24374624-24377698 29 4.6
02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608 29 4.6
12_01_0228 - 1726856-1727049,1727280-1727355,1727454-1727585,172... 28 6.1
11_01_0231 - 1791754-1791947,1792178-1792253,1792352-1792483,179... 28 6.1
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 28 6.1
05_04_0039 + 17421826-17421966,17422105-17422168,17422562-174226... 28 6.1
01_06_1427 + 37296883-37297588,37298504-37298658,37300596-37300955 28 6.1
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 28 8.1
05_03_0262 - 11222790-11222792,11222848-11222965,11223218-112233... 28 8.1
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 28 8.1
03_05_0464 - 24585422-24585441,24585585-24585690,24585779-245859... 28 8.1
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +3
Query: 327 GTSGTPLDLLANYFTVETTPKWGLYQYHVDISP---EEDSTGVRKALMRVHSKTLGGY-- 491
G G + L AN+F V+ P ++ Y+VDISP +E + ++K L+ + L G
Sbjct: 208 GVEGAEIPLSANHFLVQFDPGQKIFHYNVDISPRPSKETARMIKKKLVEENPSVLSGSQP 267
Query: 492 LFDG 503
FDG
Sbjct: 268 AFDG 271
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +3
Query: 324 KGTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEEDSTGVRKALM 461
KGT G + AN+F E K L+QY V I+PE S GV +A+M
Sbjct: 314 KGTYGDRCIVKANHFFAELPDK-DLHQYDVSITPEVTSRGVNRAVM 358
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 35.9 bits (79), Expect = 0.031
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +3
Query: 324 KGTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEEDSTGVRKALM 461
KGT G + AN+F E K L+QY V I+PE S GV +A++
Sbjct: 197 KGTFGDRCIVKANHFFAELPDK-DLHQYDVSITPEVPSRGVNRAVI 241
>05_04_0146 + 18393447-18394043
Length = 198
Score = 32.7 bits (71), Expect = 0.28
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -1
Query: 305 WTCAQDGNSFRKDSSTPRREPRPTTDDASPPPDEWGPSSNFCMRCCTSISPGC-SCVVGV 129
+T A+DGN + R P ASPPP E ++ M ++ P S G
Sbjct: 59 FTSAEDGNGDTTALTEQPRPPASLPPSASPPPPEREAAA--AMAAASASPPWAPSPARGR 116
Query: 128 TRCEARPACAVGVGTPALTGG 66
T+ PA A V A GG
Sbjct: 117 TKAAVAPAAAAAVVAAASAGG 137
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Frame = +3
Query: 327 GTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEEDSTGVRKALM----RVHSKT-LGG- 488
GT G + + AN+F V + +Y Y V +SP + + + +M R+H ++ LGG
Sbjct: 199 GTVGERIVVRANHFLVRVSDNDMIYLYDVSLSPPPKTRRINRVVMSELARLHRESHLGGI 258
Query: 489 -YLFDGT 506
+ +DG+
Sbjct: 259 SFAYDGS 265
>06_03_1494 +
30554997-30555608,30555707-30555915,30556006-30556155,
30556254-30556312,30556852-30556961,30557216-30557322,
30557443-30557581,30557705-30557821,30557918-30558025,
30558221-30558292,30558783-30558948,30559044-30559165,
30559245-30559382,30559462-30559604,30559699-30559761,
30560107-30560170,30560238-30560373,30560478-30560551,
30560640-30560734,30560829-30560860,30560973-30561175
Length = 972
Score = 31.1 bits (67), Expect = 0.87
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Frame = +3
Query: 327 GTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEED----STGVRKALMRVHSKT-LGGY 491
G+ GT + AN+F + K L+QY V I+PE S V + L+R+H + LGG
Sbjct: 178 GSIGTRCLVKANHFFAQLPDK-DLHQYDVSITPELTSRIRSRAVMEELVRLHKMSYLGGR 236
Query: 492 L--FDG 503
L +DG
Sbjct: 237 LPAYDG 242
>07_01_0657 -
4915264-4915386,4915586-4915714,4917773-4917859,
4918220-4918368,4918498-4918555,4918632-4920614,
4922064-4922123
Length = 862
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 578 VRYLFYDQSIAPWDQDADDLQCTNSAIKEISS 483
+ L DQ + PWDQ++D +Q S + + S
Sbjct: 678 IEALILDQDLIPWDQESDFIQLEVSRFQSLES 709
>02_04_0229 + 21093398-21094423
Length = 341
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 281 SFRKDSSTPRREPRPTTDDASPPPDEWGPS 192
SFR S P+ P+ PPPD+ PS
Sbjct: 130 SFRNKSKAPKNPPQDPPPTLPPPPDQPNPS 159
>01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622
Length = 288
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -1
Query: 260 TPRREPRPTTDDASPPPDEWGPSSNFCMRCCTSIS 156
TPRR P D W P C RCC + S
Sbjct: 217 TPRRGAAPAGADGHACSPAWTPRRPRCRRCCCAAS 251
>09_04_0173 - 15340646-15340743,15341065-15341161
Length = 64
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -2
Query: 325 FLDVTASGRVRKMEIVSGRTLPPPVESHGQLRMMHHH 215
FL + ASG +++VSG+ + + + +++M HH
Sbjct: 16 FLAIVASGSTWLIDMVSGKRVDQDFDKNNSIQIMWHH 52
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 381 TPKWGLYQYHVDISPEEDSTGVRKALMRVHSKTL 482
T +WG YHV +S DS G++K L ++ ++
Sbjct: 659 TDEWGRSFYHVRMSDRVDSCGLKKILEYTYTNSV 692
>04_04_0322 - 24374624-24377698
Length = 1024
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 527 LHPDPMELYSDRKTDNERMRILIKLTCEVSL--ETITIYKSLT 649
LH + ME+ S KTDN+ LI+ C S E +Y +T
Sbjct: 878 LHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMT 920
>02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608
Length = 241
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 185 FCMRCCTSISPGCS 144
FC+ CCTSI P C+
Sbjct: 34 FCLACCTSICPHCA 47
>12_01_0228 -
1726856-1727049,1727280-1727355,1727454-1727585,
1727665-1727775,1727892-1727942,1728114-1728275,
1729558-1729584
Length = 250
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 280 VSGRTLPPPVESHGQ 236
+S RT+PPPV SHG+
Sbjct: 27 MSERTIPPPVSSHGE 41
>11_01_0231 -
1791754-1791947,1792178-1792253,1792352-1792483,
1792563-1792673,1792790-1792840,1793012-1793122
Length = 224
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 280 VSGRTLPPPVESHGQ 236
+S RT+PPPV SHG+
Sbjct: 1 MSERTIPPPVSSHGE 15
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 323 LRCYSFWTCAQDGNSFRKDSSTPRREPRPTTDD 225
++ ++F+ A R D+ P EP PT+DD
Sbjct: 658 IKVFAFFHIAYGQQEMRVDNPLPPAEPEPTSDD 690
>05_04_0039 +
17421826-17421966,17422105-17422168,17422562-17422620,
17423410-17423536,17425029-17425116,17425196-17425451,
17425565-17425680,17426232-17426328,17426636-17426771,
17426892-17426979,17427133-17427367
Length = 468
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +2
Query: 194 WDPIHLEVVMHHP*LAVALD---GGWKSP 271
WD I + VVM+H L +L GGW SP
Sbjct: 129 WDGIQIHVVMYHMDLPQSLQDEYGGWISP 157
>01_06_1427 + 37296883-37297588,37298504-37298658,37300596-37300955
Length = 406
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 266 SSTPRREPRPTTDDASPPPDEWGPSSNFCMRCCTSISP 153
S +PRR RPT+ SPP D + T++SP
Sbjct: 5 SPSPRRRGRPTSPSGSPPLDRTPSAKAAGGGATTTVSP 42
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 569 LFYDQ-SIAPWDQDADDLQCTNSAIKEISSECFTVNTHQCLSDS 441
+F+DQ S WD D DDL N K+ + V+++Q + DS
Sbjct: 559 VFHDQPSFKIWDSD-DDLHHENDDFKKEITPAHLVDSYQVIPDS 601
>05_03_0262 -
11222790-11222792,11222848-11222965,11223218-11223318,
11223389-11223525,11225603-11225759,11225846-11225959,
11226349-11226477
Length = 252
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 245 PRPTTDDASPPPDEW 201
P +TD +SPPPD W
Sbjct: 10 PSASTDSSSPPPDAW 24
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -1
Query: 245 PRPTTDDASPPPDEWGPSSNFCMRCCTSISP 153
P P A PPP PS+ C CC P
Sbjct: 97 PFPVPYPAPPPPSCCPPSTQQCYHCCPEPPP 127
>03_05_0464 -
24585422-24585441,24585585-24585690,24585779-24585926,
24586017-24586144,24586804-24586939,24587711-24587895
Length = 240
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = -1
Query: 248 EPRPTTDDASPPPDEWGPSSNFCMRCCTSISPGCSCVVGVTRCEARPA------CAVGVG 87
EP P D A PPP PSS+ + GCS + TRC RP+ C++GV
Sbjct: 2 EP-PAGDAALPPPP---PSSSVIF-----LGTGCSGALPDTRCLLRPSAPPCAVCSLGVS 52
Query: 86 TP 81
P
Sbjct: 53 LP 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,285,805
Number of Sequences: 37544
Number of extensions: 481562
Number of successful extensions: 1703
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1700
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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