Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20509
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9279| Best HMM Match : Piwi (HMM E-Value=0) 54 8e-08
SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5) 31 1.2
SB_38592| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_47374| Best HMM Match : RAMP (HMM E-Value=7.4) 29 3.6
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_41289| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_8748| Best HMM Match : Astacin (HMM E-Value=0) 29 3.6
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_37050| Best HMM Match : Gag_MA (HMM E-Value=3.7) 28 6.2
SB_17930| Best HMM Match : Pkinase (HMM E-Value=0) 28 6.2
SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0) 28 6.2
SB_37647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_10433| Best HMM Match : Keratin_B2 (HMM E-Value=4.4) 28 6.2
SB_54002| Best HMM Match : POP1 (HMM E-Value=0) 28 8.3
SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_9279| Best HMM Match : Piwi (HMM E-Value=0)
Length = 941
Score = 54.4 bits (125), Expect = 8e-08
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +3
Query: 318 SKKGTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEEDSTGVRKALMRVHSKTLGGY-L 494
+K+G+ GT + +++NYF +ET P+ +YQY+V SPE D R AL+ + LG
Sbjct: 34 NKEGSVGTKVGIVSNYFRLETRPQAAIYQYNVSFSPEVDFKKARFALIGEQRELLGNIRA 93
Query: 495 FDGTVCTL 518
FDG V L
Sbjct: 94 FDGMVLFL 101
>SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)
Length = 279
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -2
Query: 358 ASRSRGVPEVPFLDVTASGRVRKMEIVSGRTLPPPVESHGQLRMMHHH 215
+S S+ +P P L S S ++LPPP S Q HHH
Sbjct: 89 SSSSQSLPPPPSLSSQTSSSSPPPSSSSSQSLPPPPSSSSQPSSHHHH 136
>SB_38592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -1
Query: 383 SCFNSKIVGKQIQGSTRSTFLR--CYSFWTCAQDGNSFRKDSSTPRREPRPTTDDASPP 213
S F+ +G Q+ S+ +T R CY W A FR + + PR TT+ PP
Sbjct: 88 SSFSQLFLGLQLPPSSPTTSTRSACYHRWFQAVVAPRFRSMIADAPKTPRLTTEPNQPP 146
>SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 45 LGTTIQCSSSKSWCPDTNSTSGSRLTPCYSHYT 143
L T+ SS KS N +G+RLT CYS T
Sbjct: 84 LTTSHSSSSDKSCYEGMNKATGTRLTDCYSKLT 116
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 255 GGGRVLPETISILRTRPEAVTSKKGTSGTPLDLLANYFT 371
G GRV+P L T PE T G+ PLDLL + T
Sbjct: 3429 GMGRVVPVPFLSLFTGPELETMVCGSPDIPLDLLKSVVT 3467
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 63 CSSSKSWCPDTNSTSGSRLTPCYSHYT*TSRRY 161
C + C + + S R TPCY YT ++RY
Sbjct: 831 CYERYTPCIERYTPSTKRYTPCYERYTPCTKRY 863
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 84 CPDTNSTSGSRLTPCYSHYT*TSRRYRCAT 173
C + + S R TPCY YT RY +T
Sbjct: 817 CTERYTPSTKRYTPCYERYTPCIERYTPST 846
>SB_47374| Best HMM Match : RAMP (HMM E-Value=7.4)
Length = 158
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +3
Query: 45 LGTTIQCSSSKSWC---PDTNSTSGSRLTPCYSHYT*TSRRYRCATTHAKIRTG 197
LGTT C + + WC T SGS L C S R +TH K + G
Sbjct: 3 LGTTPACLTERDWCVLGEKTRGFSGSDLANCTSDAVFEPVRELQRSTHWKQQAG 56
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -1
Query: 281 SFRKDSSTPRREPRPTTDDASPPPDEWGPSSNFCMRCCTSISPGCSCVV 135
S K S+ EP P+ + P P W ++ TS SP S ++
Sbjct: 1035 SIDKQDSSRGSEPPPSPLSSQPSPKRWSSQNSLGENSSTSSSPRMSIII 1083
>SB_41289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 327 GTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEEDSTGV 446
G G + L AN+F V LY Y ++ISPE+ V
Sbjct: 10 GREGRKIKLRANFFQVTLPNVDFLYHYDLEISPEKAPVSV 49
>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
Length = 757
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 173 CCTSISPGCSCVVGVTRCEARPACAVGVGTPALTGG 66
CC + +PG + VG+ EA AC V TP+LT G
Sbjct: 431 CCMTANPGTNTQVGLQTPEA--ACCATV-TPSLTAG 463
>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2126
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = -1
Query: 311 SFWTCAQDGNSFRKDSST-PRR---EPRPTTDDASPPPDEWGPSSNFCMRCCTSISPGCS 144
S +T ++GNS K+ S P++ + +P D +P P+ + C +C + S
Sbjct: 1246 SRYTEPRNGNSEGKEGSDKPQKLLSQQQPQPKDTTPIPNVMPFGTATCSKCKDVFADSLS 1305
Query: 143 CVVGVTRCEARPAC 102
C + + + +P C
Sbjct: 1306 CRMHIEKRHMKPRC 1319
>SB_37050| Best HMM Match : Gag_MA (HMM E-Value=3.7)
Length = 419
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 272 KDSSTPRREPRPTTDDASPPPDEWGPSSNF 183
+D +TP P+P+ ASPP D P NF
Sbjct: 92 RDCATPPDTPQPSPPSASPPKD---PDKNF 118
>SB_17930| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 286
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 557 QSIAPWDQDADDLQCTNSAIKEISSECFTVNTHQCLSDSSAVFF 426
Q A D D +Q ++ S+ F V H C SS +FF
Sbjct: 58 QPRAAQSMDIDWVQTEKHVFEQASNHPFLVGLHSCFQTSSRLFF 101
>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 879
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -1
Query: 170 CTSISPGCSCVVGVTRCEARPACAVGVGTPALTGGTLDC 54
CT+ G +C V C A P C G G+ T G C
Sbjct: 483 CTAQWQGPTCTTDVNECAASPPCVNG-GSCTNTAGDYHC 520
>SB_37647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 666
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -3
Query: 546 SMGSGCRRFTVYKQCHQRDILRVFYCEHASVPFGLQC---CLLLEKYRRDID 400
+ G G T+YK C + VFY E + VPF C CL+ K + ++
Sbjct: 212 TQGKGGHLTTIYKSCTRVRKNHVFY-EESFVPFPTHCVGYCLIAGKICKSVN 262
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 275 RKDSSTPRREPRPTTDDASPPPDE 204
R+ S P+REPR + ASPP E
Sbjct: 1089 RRSPSPPKREPRRRSPSASPPRRE 1112
>SB_10433| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)
Length = 212
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 15 TWS*TSTSIWLGTTIQCSSSKSWCPDTNSTSGSRLTPCYSHYT*TSRRYRCATTHAKIRT 194
T++ TS +I T +S + C T T+ S+ T C Y TS RC T+
Sbjct: 126 TYNTTSQAIRYVHTYNTTSQATRCVHTYDTT-SQATRCVHTYDTTSLATRCVHTYNTTSQ 184
Query: 195 GTPFIWRW 218
T +++ +
Sbjct: 185 ATRYVYTY 192
>SB_54002| Best HMM Match : POP1 (HMM E-Value=0)
Length = 886
Score = 27.9 bits (59), Expect = 8.3
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +3
Query: 177 HAKIRTGTPFIWRW*CIIRSWPWLSTGGGRVLPETISIL-RTRPEAVTSKKGTSGTPLDL 353
+AK+ PF + W ++R WL+ G V PE+ S R R + +K+G ++
Sbjct: 629 YAKLGVPCPFSYPWEQLVRE--WLARGIPVVKPESASSCDRERLDLNETKEG-EAVGING 685
Query: 354 LANYFTVETTPKWGLYQYHVDISPEE 431
VE PK G Q +D +E
Sbjct: 686 REQGSPVENCPKSGTPQIAMDSGGKE 711
>SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = -1
Query: 368 KIVGKQIQGSTRSTFLRCYSFWTCAQDGNSFRKDSSTPRREPRPTTDDASPPPDEWGPSS 189
+I+ K+ R+ L + DG+S+ S+PR PR T PPP P S
Sbjct: 173 RIITKKKTPPRRTNLLEAFRAVAGTPDGSSY--SPSSPR--PRSTAGSIGPPPRTSTPRS 228
Query: 188 NFCMRCCTSISP 153
R T +P
Sbjct: 229 RTGSRVRTPPTP 240
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,177,309
Number of Sequences: 59808
Number of extensions: 547722
Number of successful extensions: 1744
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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