Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20508
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 115 4e-26
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 6e-14
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 67 1e-11
SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06) 65 5e-11
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 61 7e-10
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41) 58 7e-09
SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33) 58 7e-09
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 57 1e-08
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 54 1e-07
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_59094| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19) 43 3e-04
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0) 37 0.014
SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058) 36 0.042
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19) 34 0.096
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21) 34 0.13
SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07) 31 0.68
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05) 31 0.90
SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19) 30 1.6
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 30 2.1
SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12) 29 4.8
SB_45044| Best HMM Match : Thioredoxin (HMM E-Value=1.1) 28 6.3
SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7) 28 6.3
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_51588| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 115 bits (276), Expect = 4e-26
Identities = 49/77 (63%), Positives = 62/77 (80%)
Frame = +2
Query: 257 LKTDDPPVALAKVDCTEGGKSTCEQFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKYMR 436
LK +DPPV LAKVDCTE GK TC ++ VSGYPTLKIFR GE+S +Y+GPR+S+GI++YM+
Sbjct: 584 LKKNDPPVPLAKVDCTEAGKDTCSKYGVSGYPTLKIFRNGEMSKDYDGPRDSSGIIRYMK 643
Query: 437 AQVGPSSKELLTVADFE 487
Q GPSS E+ +V E
Sbjct: 644 KQAGPSSVEIKSVDHLE 660
Score = 65.3 bits (152), Expect = 5e-11
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +3
Query: 93 IIYLCKAAEEDVLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAA 251
++++ DVLDL DS+F + ++ D LV F+APWCGHCKRL PEY AA
Sbjct: 529 LLFVGSTLSSDVLDLGDSNFKSGVAGKDIMLVEFFAPWCGHCKRLAPEYETAA 581
Score = 58.0 bits (134), Expect = 7e-09
Identities = 23/47 (48%), Positives = 35/47 (74%)
Frame = +3
Query: 555 FLKTADKLREEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFEDS 695
F++TA+++R+ +FAH+S +VLEK YKN +V++RPK L K E S
Sbjct: 685 FMRTANEMRDSFSFAHASVTDVLEKYNYKNQIVVFRPKHLHTKLEPS 731
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +2
Query: 293 VDCTEGGKSTCE-QFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKYMRAQVGPSSKEL 466
+DC G++TC +F + +PTLK+FR G+ +Y GP+++ + Y+ Q+G K L
Sbjct: 434 MDCFGAGRATCYYRFGIHQWPTLKLFRYGQPWGDYTGPQDTASLESYIHDQLGDGKKRL 492
Score = 42.7 bits (96), Expect = 3e-04
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 183 LVMFYAPWCGHCKRLKPEY 239
L+ FYAPWCGHCK L+P+Y
Sbjct: 884 LIEFYAPWCGHCKSLEPKY 902
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 74.9 bits (176), Expect = 6e-14
Identities = 37/84 (44%), Positives = 55/84 (65%)
Frame = +2
Query: 257 LKTDDPPVALAKVDCTEGGKSTCEQFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKYMR 436
L+ DPP+ LA VD T + +++ V GYPTLK+FRKG+ ++EY G R+ GI YMR
Sbjct: 222 LQKHDPPIPLAIVDATIESE-LAQKYEVQGYPTLKVFRKGK-ATEYKGQRDQYGIASYMR 279
Query: 437 AQVGPSSKELLTVADFEAFTSKDE 508
+QVGPSS+ L ++ + F + +
Sbjct: 280 SQVGPSSRILSSLKAVQDFMKEKD 303
Score = 74.5 bits (175), Expect = 7e-14
Identities = 37/68 (54%), Positives = 46/68 (67%)
Frame = +2
Query: 257 LKTDDPPVALAKVDCTEGGKSTCEQFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKYMR 436
+K +DPPV AK+D T ++F VSGYPTLKIFRKG EY GPRE +GIV+YM+
Sbjct: 107 MKLNDPPVPFAKMDATVAS-DIAQRFDVSGYPTLKIFRKG-TPYEYEGPREESGIVEYMK 164
Query: 437 AQVGPSSK 460
Q P+ K
Sbjct: 165 KQSDPNWK 172
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/45 (55%), Positives = 31/45 (68%)
Frame = +3
Query: 117 EEDVLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAA 251
E+DV L +F V+ +++ LV FYAPWCGHCK L PEYA AA
Sbjct: 60 EDDVSVLNSKNFDRVIEENNIILVEFYAPWCGHCKSLAPEYAKAA 104
Score = 54.4 bits (125), Expect = 8e-08
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +3
Query: 129 LDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAA 251
L LT +F+ V+++ LV F+APWCGHCK+L PEY AA
Sbjct: 179 LTLTKENFTEVVNRESLMLVEFFAPWCGHCKQLAPEYEKAA 219
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +3
Query: 555 FLKTADKLREEVTFAHSSANEVLEKTGYK-NNVVLYRPKRLQNKFE 689
+L+ + +R++ FAH+ + G K +++VL++P+R +K+E
Sbjct: 322 YLEANNDVRDDYPFAHTFDAAAKKHFGIKKSSIVLFQPERFLSKYE 367
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 108 KAAEEDVLDLTDSDFSAVLSQ-HDTALVMFYAPWCG 212
K+ +E V + F +++ L+ FYAPWCG
Sbjct: 521 KSNKEPVTVVVGKTFDEIVNDPKKDVLIEFYAPWCG 556
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Frame = +3
Query: 78 VLLLGIIYLCKAAE----EDVLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAV 245
VLLL ++ L + E EDVL LT+ +F ++ + LV FYAPWCGHCK L PEYA
Sbjct: 6 VLLLALVSLAYSEEIKEEEDVLVLTEKNFDEAVAANKHVLVEFYAPWCGHCKALAPEYAK 65
Query: 246 AAG 254
AAG
Sbjct: 66 AAG 68
Score = 60.9 bits (141), Expect = 1e-09
Identities = 33/83 (39%), Positives = 49/83 (59%)
Frame = +2
Query: 257 LKTDDPPVALAKVDCTEGGKSTCEQFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKYMR 436
LK++ + LAKVD T K E+F V GYPT+K F+ G+ SEY G R + IV ++
Sbjct: 70 LKSEKSEIKLAKVDATAETKLG-EKFQVQGYPTIKFFKDGK-PSEYAGGRTAPEIVSWLN 127
Query: 437 AQVGPSSKELLTVADFEAFTSKD 505
+ GP +K+L T + F +K+
Sbjct: 128 KKTGPPAKDLATADAMKDFITKE 150
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 135 LTDSDFSAVLSQHD-TALVMFYAPWCGHCKRLKP 233
L +F V D V FYAPWCGHCK+L P
Sbjct: 389 LCGKNFDEVARNKDKNVFVEFYAPWCGHCKQLAP 422
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 266 DDPPVALAKVDCTEGGKSTCEQFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKYMRA 439
D + +AK+D T + E V +PT+K F K + +YNG R + VK++ +
Sbjct: 433 DHADIVVAKMDSTA---NEVEGVKVHSFPTIKYFPKEGEAVDYNGGRTLDDFVKFLES 487
>SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)
Length = 70
Score = 65.3 bits (152), Expect = 5e-11
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +3
Query: 93 IIYLCKAAEEDVLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAA 251
++++ DVLDL DS+F + ++ D LV F+APWCGHCKRL PEY AA
Sbjct: 4 LLFVGSTLSSDVLDLGDSNFKSGVAGKDIMLVEFFAPWCGHCKRLAPEYETAA 56
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 61.3 bits (142), Expect = 7e-10
Identities = 27/46 (58%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Frame = +3
Query: 117 EEDVLDLTDSDFSA-VLSQHDTALVMFYAPWCGHCKRLKPEYAVAA 251
+EDV++LTD++F VL+ D LV F+APWCGHC+RL PE+A AA
Sbjct: 78 KEDVVELTDTNFEKEVLNSKDLWLVEFFAPWCGHCQRLAPEWAKAA 123
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +2
Query: 320 TCEQFSVSGYPTLKIFRKGELSS----EYNGPRESNGIVKY 430
T ++ V GYPT+K+F G +S +Y G R ++ I++Y
Sbjct: 143 TASRYQVQGYPTIKVFAAGIKNSHSVEDYQGGRTASDIIQY 183
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 332 FSVSGYPTLKIFRKGELS-SEYNGPRESNGIV 424
+++ G+PT+KIF + S +YNG R + GIV
Sbjct: 11 YNIRGFPTIKIFGANKNSPQDYNGQRTAQGIV 42
>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
Length = 271
Score = 58.0 bits (134), Expect = 7e-09
Identities = 28/50 (56%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Frame = +3
Query: 111 AAEED---VLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAA 251
+AEED V L SDF L+ + LVMFYAPWCGHCK KP+Y AA
Sbjct: 141 SAEEDSSLVKQLDGSDFWGYLNNTEHVLVMFYAPWCGHCKNAKPKYEKAA 190
Score = 54.4 bits (125), Expect = 8e-08
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +3
Query: 117 EEDVLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAA 251
+ V+ LTD + H+ LVM++APWCGHC +KP Y AA
Sbjct: 49 DSKVVFLTDESHDEFIKSHENVLVMYFAPWCGHCNEMKPNYYKAA 93
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/64 (35%), Positives = 36/64 (56%)
Frame = +2
Query: 266 DDPPVALAKVDCTEGGKSTCEQFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKYMRAQV 445
D P AK+DCT+ G C++ V+GYPTL+ + G+ EY+G R + ++ +M
Sbjct: 195 DQPNRVFAKLDCTKFG-DVCDKEEVNGYPTLRYYLYGKFVVEYDGDRVTEDLISFMEEPP 253
Query: 446 GPSS 457
P S
Sbjct: 254 LPLS 257
Score = 35.9 bits (79), Expect = 0.032
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +2
Query: 281 ALAKVDCTEGGKSTCEQFSVSGYPT 355
ALA VDCTE K+TC Q + GYPT
Sbjct: 19 ALAAVDCTES-KNTCNQRDIKGYPT 42
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/71 (28%), Positives = 39/71 (54%)
Frame = +2
Query: 221 ETKARVRCSRRLLKTDDPPVALAKVDCTEGGKSTCEQFSVSGYPTLKIFRKGELSSEYNG 400
E K + ++L +D LA VDCT+ K ++ +++GYPT+K++ K +++
Sbjct: 84 EMKPNYYKAAQVLHDEDANCNLAAVDCTKH-KDVAKKVALAGYPTVKLY-KASNTAKAAS 141
Query: 401 PRESNGIVKYM 433
E + +VK +
Sbjct: 142 AEEDSSLVKQL 152
>SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33)
Length = 386
Score = 58.0 bits (134), Expect = 7e-09
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3
Query: 123 DVLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAA 251
+V+ L D F ++++ + LVMFYAPWCGHCK +KPEY AA
Sbjct: 83 EVVHLRDDMFDDFVAKNPSVLVMFYAPWCGHCKAMKPEYVDAA 125
Score = 54.8 bits (126), Expect = 6e-08
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +3
Query: 123 DVLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAA 251
+V L+D+ F + + + LVMFYAPWCGHCK+ KPE AA
Sbjct: 196 EVYHLSDTTFKSFVKKKKHVLVMFYAPWCGHCKKAKPELMSAA 238
Score = 34.7 bits (76), Expect = 0.073
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 183 LVMFYAPWCGHCKRLKPEYAVAA 251
+++ Y CG+CKR KPE+A AA
Sbjct: 3 VIVLYIAGCGYCKRFKPEFAAAA 25
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 123 DVLDLTDSDFSAVLSQHDTALVMFYAP 203
+V LT F L D+ LVMFYAP
Sbjct: 335 NVQHLTQDTFDEALKTFDSILVMFYAP 361
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = +3
Query: 63 GSLKFVLLLGIIYLCKAAEEDVLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEY 239
G++ F L L + + + V+DLT +F V++ ALV FYAPWCGHCK+L P Y
Sbjct: 4 GTVLFKLFL-LFSISSLTQGKVIDLTKDNFDEVVNGEKFALVEFYAPWCGHCKQLAPTY 61
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +2
Query: 263 TDDPPVALAKVDCTEGGKSTCEQFSVSGYPTLKIFRKGELS-SEYNGPRESNGIVKYMRA 439
T V +AKVD +G + +F V G+PT+K F KG + EYNG R+ N +K++
Sbjct: 69 TQSSDVIIAKVDA-DGDRDLGSRFDVKGFPTIKYFPKGSTTPEEYNGGRDINDFIKFIEE 127
Query: 440 QVG 448
+ G
Sbjct: 128 KTG 130
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 54.8 bits (126), Expect = 6e-08
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 66 SLKFVLLLGIIYLCKAAEED-VLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYA 242
++ FV+ L +I A +E+ + +LTD DF L + LV FYAPWC C L+P+Y
Sbjct: 3 AIAFVVALCVIAPSYARKENPIFELTDQDFDNFLKDKEVMLVDFYAPWCSDCDNLRPKYE 62
Query: 243 VAA 251
AA
Sbjct: 63 KAA 65
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 53.6 bits (123), Expect = 1e-07
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +3
Query: 117 EEDVLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEY 239
E +L+L DS+F + +H LV FYAPWC HCK++ P+Y
Sbjct: 133 EPTLLELDDSNFEPAVQKHKFVLVDFYAPWCFHCKKMAPDY 173
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +3
Query: 114 AEEDVLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAA 251
A VL+L D +F+ + +++ LV FYAPWC C+RL P + AA
Sbjct: 49 ASPAVLNLNDQNFNETIKKNEYVLVDFYAPWCSDCQRLSPLFDTAA 94
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +2
Query: 245 SRRLLKTDDPPVALAKVDCTEGG---KSTCEQFSVSGYPTLKIFRKGELSSEYNGPRESN 415
++ LL V LAKVDC+ K TC++++V PT+ +F G+ E+ G +
Sbjct: 177 AKELLILSHNSVRLAKVDCSANNMATKKTCKKYNVKFLPTIYLFHDGKFVEEFEGNNRNK 236
Query: 416 GIVK 427
+K
Sbjct: 237 KSIK 240
>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +2
Query: 287 AKVDCTEG-GKSTCEQFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKYMRAQVGPSSKE 463
AKVDCT+ K C+ F + GYP++K+F+ G+ + +Y G R +V YM + +S++
Sbjct: 75 AKVDCTDPRSKVLCDNFKIEGYPSVKLFKFGKYAGDYIGQRTDAALVNYMESVTSTASQQ 134
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 126 VLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAA 251
V DL +F ++ + D LV FYAPWC HC+ L P+ AA
Sbjct: 22 VYDLNAQNFDQMIREKDIMLVDFYAPWCHHCQELLPQLEGAA 63
>SB_59094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +2
Query: 293 VDCTEGGKSTCE-QFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKYMRAQVGPSSKEL 466
+DC G++TC +F + +PTLK+FR G+ +Y GP+++ + Y+ Q+G K L
Sbjct: 237 MDCFGAGRATCYYRFGIHQWPTLKLFRYGQPWGDYTGPQDTASLESYIHDQLGDGKKRL 295
>SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19)
Length = 229
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +2
Query: 278 VALAKVDCTEGGKSTCEQFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKYMRAQVGPSS 457
V LA+V+C + C+ +++ YPT+K+FRKG Y GP +++ +VK + PS
Sbjct: 10 VRLARVNCFDW-TDVCQDNNITVYPTIKLFRKGADELIYGGPLDADHLVKAVILLQQPSP 68
Query: 458 KELLTVADFEAFTSKD 505
L+ D + F D
Sbjct: 69 IR-LSEDDIDPFLKGD 83
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +3
Query: 150 FSAVLSQHDTALVMFYAPWCGHCKRLKPEY 239
F+ VL+ D +V FYAPWCG C R P+Y
Sbjct: 444 FTDVLASEDAWVVDFYAPWCGPCMRFAPKY 473
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 96 IYLCKAAEEDVLDLTDSDF-SAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAA 251
++ ++ +V L DF S+V S V F+APWC C RL PEY AA
Sbjct: 276 LFAKESVSSNVHALGPEDFPSSVTSPSRPFFVDFFAPWCPPCMRLLPEYRKAA 328
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/81 (19%), Positives = 36/81 (44%)
Frame = +2
Query: 275 PVALAKVDCTEGGKSTCEQFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKYMRAQVGPS 454
PV VDCT + C Q+++ YPT ++ + ++ G + I++++ + +
Sbjct: 335 PVGFGTVDCTVHSQ-LCHQYNIRSYPTTILYNNSQ-PHQFIGHHNALDIIEFVEVEYPEA 392
Query: 455 SKELLTVADFEAFTSKDE*WL 517
+ D ++ E W+
Sbjct: 393 FRSAAFTGDIRVPCAQQEDWV 413
>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
Length = 308
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 126 VLDLTDSDFSAVLSQHDTALVM--FYAPWCGHCKRLKPEYA 242
VL+L DS F+A L+ T LV+ F A WCG CK + P Y+
Sbjct: 11 VLEL-DSQFTAELTNAGTKLVVADFTASWCGPCKSIAPVYS 50
>SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 35.9 bits (79), Expect = 0.032
Identities = 13/34 (38%), Positives = 25/34 (73%), Gaps = 2/34 (5%)
Frame = +3
Query: 144 SDFSAVLSQHDTALVM--FYAPWCGHCKRLKPEY 239
++F++V++ LV+ FYA WCG C+++KP++
Sbjct: 19 AEFNSVINNTKDKLVVIDFYAEWCGPCRQIKPKF 52
>SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058)
Length = 664
Score = 35.5 bits (78), Expect = 0.042
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +3
Query: 150 FSAVLSQ--HDTAL--VMFYAPWCGHCKRLKPEYAVAA 251
F+ VLS H++ L V FYAPWCG +R E+ +AA
Sbjct: 441 FAKVLSSFLHNSPLNFVFFYAPWCGQSRRAVEEFNIAA 478
>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
Length = 975
Score = 34.3 bits (75), Expect = 0.096
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 138 TDSDFSAVLSQHDTALVMFYAPWCGHCKRLKP 233
TDS V++ L++FY PWCG C P
Sbjct: 524 TDSFDDIVINNDQDVLLVFYTPWCGMCINFAP 555
>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
Length = 186
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 278 VALAKVDCTEGGKSTCEQFSVSGYPTLKIFRKGELSSEYNGPRES 412
+ +AKVDCT + C + ++ YPT+K++ G++ Y G R +
Sbjct: 19 LTIAKVDCTSD-VNLCVKQNIRAYPTMKLYYDGDI-KRYTGRRNA 61
Score = 33.5 bits (73), Expect = 0.17
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 338 VSGYPTLKIFRKGELSSEYNGPRESNGIVKYM 433
++GYPTL +F+ G EY+G R+ + + +++
Sbjct: 146 INGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 177
Score = 31.9 bits (69), Expect = 0.51
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 186 VMFYAPWCGHCKRLKP 233
V FYAPWC HC +L P
Sbjct: 111 VKFYAPWCIHCIKLAP 126
>SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 33.5 bits (73), Expect = 0.17
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 338 VSGYPTLKIFRKGELSSEYNGPRESNGIVKYM 433
++GYPTL +F+ G EY+G R+ + + +++
Sbjct: 1 INGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 32
>SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07)
Length = 438
Score = 31.5 bits (68), Expect = 0.68
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 147 DFSAVLSQHDTALVMFYAPWCGHCKRLKPEY 239
+F L ++ A + F A WCG C+ + P++
Sbjct: 3 EFDKFLKDNEVAAIDFTATWCGPCRMIGPKF 33
>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
Length = 215
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 138 TDSDFSAVLSQHDT--ALVMFYAPWCGHCKRL 227
T +DF +LS A+V F+APW HC ++
Sbjct: 8 TVTDFDRILSSSSNVLAVVHFFAPWAPHCNQM 39
>SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)
Length = 335
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 57 MFGSLKFVLLLGIIYLCKAAE-EDVLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRL 227
+F + F+L+ I+ + + +++ T+ + + + FYAPW HC+R+
Sbjct: 4 LFITNTFLLISLTIFTSTSVHCKKIVEFTNENVDEYVDGSKFVFIFFYAPWDDHCQRI 61
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 141 DSDFSAVLSQHDTALVM--FYAPWCGHCKRLKPEY 239
DS FS + + + LV+ F A WCG CK + P +
Sbjct: 16 DSFFSVEIERAGSRLVVIDFTATWCGPCKSIAPVF 50
>SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12)
Length = 828
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 531 KGI*PEREFLK--TADKLREEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFED 692
KG+ PE + T+DK + HS +N K G KN PK+ + +F+D
Sbjct: 134 KGLIPEDDEKNKDTSDKEAGKSIVKHSKSNTTSNKEGEKNTPTSKSPKKGRIRFKD 189
>SB_45044| Best HMM Match : Thioredoxin (HMM E-Value=1.1)
Length = 213
Score = 28.3 bits (60), Expect = 6.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 183 LVMFYAPWCGHCKRLKPEYA 242
+++ WCG CK L+P++A
Sbjct: 1 MILITKNWCGACKALRPKFA 20
>SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)
Length = 576
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 126 VLDLTDSDFSAVLSQHDTALVMFYAPWCGHCK 221
+ D+ D+ S SQ ++++ +AP C CK
Sbjct: 344 IRDVNDTQLSGTTSQDQYSVLLVHAPCCNACK 375
>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2147
Score = 28.3 bits (60), Expect = 6.3
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Frame = -3
Query: 546 QVRFLFEESDNHYSSLEVKASKSATVRSSLELGPTWARMYLTMPLDSLGPLYSEESSPFL 367
QV + +ES + + + S+S+ V S + P+ +T S + + SP
Sbjct: 867 QVTSVTQESHSTQVTSATQESRSSQVTSVTQEPPSSQVTSVTQESPSTQVTSATQESPSS 926
Query: 366 KIFSVGY--PDTENCSQVLLPPSVQSTLASATGGSSVFNS 253
++ SV P T+ S PPS Q T A+ SS S
Sbjct: 927 QVTSVTQEPPSTQVTSVTQEPPSTQVTSATQESRSSQVTS 966
>SB_51588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 40 HRLNSKCSDH*SLFFYWA*FIYVKRPRRMFSILQIPTFR 156
HR +SKC+ H + FF W+ I+ P + I + F+
Sbjct: 179 HRTHSKCNQHANSFFPWSINIWNNLPGSITDIKEKGKFK 217
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,127,313
Number of Sequences: 59808
Number of extensions: 418298
Number of successful extensions: 1161
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -