Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20507
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300...   149   2e-36
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419          149   2e-36
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913...    32   0.34 
01_01_1072 + 8454342-8455022                                           28   7.3  
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975...    27   9.7  

>11_04_0317 -
           16328558-16328612,16328698-16328901,16329794-16330065,
           16330152-16330220
          Length = 199

 Score =  149 bits (360), Expect = 2e-36
 Identities = 72/89 (80%), Positives = 80/89 (89%)
 Frame = +1

Query: 244 QKTEAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPL 423
           +K  AVRIVKHA EIIHLLT  NP+QV+V AIINSGPRED+TRIG AG VRRQAVD+SPL
Sbjct: 80  KKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPL 139

Query: 424 RRVNQAIWLLCTGAREAAFRNIKTIAECV 510
           RRVNQAI+LL TGARE+AFRNIKTIAEC+
Sbjct: 140 RRVNQAIYLLTTGARESAFRNIKTIAECL 168



 Score =  120 bits (290), Expect = 7e-28
 Identities = 55/73 (75%), Positives = 64/73 (87%), Gaps = 1/73 (1%)
 Frame = +2

Query: 38  EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 214
           E+KLF RWS  DVQV+D+SL DY++V   K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10  EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69

Query: 215 SLMMHGRNNGKKL 253
           SLMMHGRNNGKK+
Sbjct: 70  SLMMHGRNNGKKI 82



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 29/31 (93%), Positives = 31/31 (100%)
 Frame = +3

Query: 510 ADELINAAKGSSNSYAIKKKDELERVAKSNR 602
           ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 169 ADELINAAKGSSNSYAIKKKDEIERVAKANR 199


>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
          Length = 200

 Score =  149 bits (360), Expect = 2e-36
 Identities = 72/89 (80%), Positives = 80/89 (89%)
 Frame = +1

Query: 244 QKTEAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPL 423
           +K  AVRIVKHA EIIHLLT  NP+QV+V AIINSGPRED+TRIG AG VRRQAVD+SPL
Sbjct: 81  KKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPL 140

Query: 424 RRVNQAIWLLCTGAREAAFRNIKTIAECV 510
           RRVNQAI+LL TGARE+AFRNIKTIAEC+
Sbjct: 141 RRVNQAIYLLTTGARESAFRNIKTIAECL 169



 Score =  115 bits (276), Expect = 4e-26
 Identities = 52/72 (72%), Positives = 62/72 (86%), Gaps = 1/72 (1%)
 Frame = +2

Query: 41  IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 217
           +KLF  WS  DVQV+D+SL DY++V   K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12  VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71

Query: 218 LMMHGRNNGKKL 253
           LMMHGRNNGKK+
Sbjct: 72  LMMHGRNNGKKI 83



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 29/31 (93%), Positives = 31/31 (100%)
 Frame = +3

Query: 510 ADELINAAKGSSNSYAIKKKDELERVAKSNR 602
           ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 170 ADELINAAKGSSNSYAIKKKDEIERVAKANR 200


>07_03_0100 +
           13389899-13390219,13390723-13390841,13391220-13391315,
           13391481-13391553,13392055-13392123
          Length = 225

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 482 LNAASRAPVHKSQIAWLTRRKGETSTA*RRTVPARPILVESSRGPE 345
           L+A+SR P  + +I    RR+G + +  RR+ P +P     +R PE
Sbjct: 49  LHASSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPE 94


>01_01_1072 + 8454342-8455022
          Length = 226

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -2

Query: 596 GFSNTLQLVL-LFDGVGVR*TLSCIN*FICTHSAIVLIFLNAASRAPVHKSQIAW 435
           GF +++ L L L  GV  R + +    F+ ++S++VL F+ + SR P+    + W
Sbjct: 128 GFGSSMLLTLGLLTGVPSR-SRAVQWPFLVSYSSLVLTFITSQSRTPLAMDVVIW 181


>05_05_0116 -
           22496535-22496576,22496974-22497058,22497468-22497545,
           22497656-22497803,22498612-22498771,22499056-22499058
          Length = 171

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -3

Query: 127 VLLFNGNVVLQRHIRDLHIVATPSAEK 47
           +++F+G++V+ + I+DLH   T   E+
Sbjct: 57  IVMFDGHIVVYKFIQDLHFFVTGGEEE 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,047,927
Number of Sequences: 37544
Number of extensions: 367880
Number of successful extensions: 839
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)