Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20507
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               167   7e-42
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)                 28   5.7  
SB_18592| Best HMM Match : DUF1298 (HMM E-Value=0.85)                  27   9.9  
SB_10104| Best HMM Match : DUF1298 (HMM E-Value=0.85)                  27   9.9  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  167 bits (406), Expect = 7e-42
 Identities = 79/89 (88%), Positives = 85/89 (95%)
 Frame = +1

Query: 244 QKTEAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPL 423
           +K   VRI+KH+FEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTVRRQAVDVSPL
Sbjct: 153 KKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPL 212

Query: 424 RRVNQAIWLLCTGAREAAFRNIKTIAECV 510
           RRVNQAIWLLCTGARE+AFRNIK+IAEC+
Sbjct: 213 RRVNQAIWLLCTGARESAFRNIKSIAECL 241



 Score =  139 bits (337), Expect = 2e-33
 Identities = 61/77 (79%), Positives = 71/77 (92%)
 Frame = +2

Query: 23  AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVE 202
           A ++P+IKLFG+WS  DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA KRFRKAQCPIVE
Sbjct: 79  APEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKRFRKAQCPIVE 138

Query: 203 RLTNSLMMHGRNNGKKL 253
           R+TNS+MMHGRNNGKKL
Sbjct: 139 RITNSMMMHGRNNGKKL 155



 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = +3

Query: 510 ADELINAAKGSSNSYAIKKKDELERVAKSNR 602
           ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 242 ADELINAAKGSSNSYAIKKKDELERVAKSNR 272



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 17/25 (68%), Positives = 22/25 (88%)
 Frame = +2

Query: 23 AADIPEIKLFGRWSCYDVQVSDMSL 97
          A ++P+IKLFG+WS  DVQVSD+SL
Sbjct: 16 APEVPDIKLFGKWSTEDVQVSDISL 40


>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
          Length = 556

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 32  IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 163
           IPE  L     C DV   +  LQ+++ + +KY  YL + A +Y+
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKYS 552


>SB_18592| Best HMM Match : DUF1298 (HMM E-Value=0.85)
          Length = 282

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 388 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVQMN*LMQLRVHLTP 552
           TV  +A+     R +  A W +C+G+  A  ++ + I + + ++ L  L +HL P
Sbjct: 186 TVGARALSKHCHRDITSAFWGICSGSEMAKNKHAQRIMDRI-LSDLSWLNIHLLP 239


>SB_10104| Best HMM Match : DUF1298 (HMM E-Value=0.85)
          Length = 282

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 388 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVQMN*LMQLRVHLTP 552
           TV  +A+     R +  A W +C+G+  A  ++ + I + + ++ L  L +HL P
Sbjct: 186 TVGARALSKHCHRDITSAFWGICSGSEMAKNKHAQRIMDRI-LSDLSWLNIHLLP 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,381,073
Number of Sequences: 59808
Number of extensions: 451464
Number of successful extensions: 1160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)