Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20507
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   146   1e-35
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   145   2e-35
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   145   2e-35
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr...    29   2.0  
At1g59590.1 68414.m06702 expressed protein                             28   6.1  
At5g01940.1 68418.m00113 eukaryotic translation initiation facto...    27   8.1  
At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family prote...    27   8.1  
At4g33450.1 68417.m04752 myb family transcription factor (MYB69)...    27   8.1  

>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  146 bits (354), Expect = 1e-35
 Identities = 70/89 (78%), Positives = 80/89 (89%)
 Frame = +1

Query: 244 QKTEAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPL 423
           +K  AVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD+SPL
Sbjct: 88  KKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPL 147

Query: 424 RRVNQAIWLLCTGAREAAFRNIKTIAECV 510
           RRVNQAI+LL TGAREAAFRNIKTIAEC+
Sbjct: 148 RRVNQAIFLLTTGAREAAFRNIKTIAECL 176



 Score =  116 bits (280), Expect = 1e-26
 Identities = 54/73 (73%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
 Frame = +2

Query: 38  EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 214
           E+KLF RWS  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 18  EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77

Query: 215 SLMMHGRNNGKKL 253
           SLMMHGRNNGKKL
Sbjct: 78  SLMMHGRNNGKKL 90



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 29/31 (93%), Positives = 31/31 (100%)
 Frame = +3

Query: 510 ADELINAAKGSSNSYAIKKKDELERVAKSNR 602
           ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 177 ADELINAAKGSSNSYAIKKKDEIERVAKANR 207


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  145 bits (352), Expect = 2e-35
 Identities = 69/89 (77%), Positives = 80/89 (89%)
 Frame = +1

Query: 244 QKTEAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPL 423
           +K  AVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD+SPL
Sbjct: 88  KKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPL 147

Query: 424 RRVNQAIWLLCTGAREAAFRNIKTIAECV 510
           RRVNQAI+L+ TGAREAAFRNIKTIAEC+
Sbjct: 148 RRVNQAIFLITTGAREAAFRNIKTIAECL 176



 Score =  115 bits (276), Expect = 3e-26
 Identities = 55/79 (69%), Positives = 65/79 (82%), Gaps = 1/79 (1%)
 Frame = +2

Query: 20  QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 196
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71

Query: 197 VERLTNSLMMHGRNNGKKL 253
           VERLTNSLMMHGRNNGKKL
Sbjct: 72  VERLTNSLMMHGRNNGKKL 90



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 29/31 (93%), Positives = 31/31 (100%)
 Frame = +3

Query: 510 ADELINAAKGSSNSYAIKKKDELERVAKSNR 602
           ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 177 ADELINAAKGSSNSYAIKKKDEIERVAKANR 207


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  145 bits (352), Expect = 2e-35
 Identities = 69/89 (77%), Positives = 80/89 (89%)
 Frame = +1

Query: 244 QKTEAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPL 423
           +K  AVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD+SPL
Sbjct: 88  KKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPL 147

Query: 424 RRVNQAIWLLCTGAREAAFRNIKTIAECV 510
           RRVNQAI+L+ TGAREAAFRNIKTIAEC+
Sbjct: 148 RRVNQAIFLITTGAREAAFRNIKTIAECL 176



 Score =  115 bits (276), Expect = 3e-26
 Identities = 55/79 (69%), Positives = 65/79 (82%), Gaps = 1/79 (1%)
 Frame = +2

Query: 20  QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 196
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71

Query: 197 VERLTNSLMMHGRNNGKKL 253
           VERLTNSLMMHGRNNGKKL
Sbjct: 72  VERLTNSLMMHGRNNGKKL 90



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 29/31 (93%), Positives = 31/31 (100%)
 Frame = +3

Query: 510 ADELINAAKGSSNSYAIKKKDELERVAKSNR 602
           ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 177 ADELINAAKGSSNSYAIKKKDEIERVAKANR 207


>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain, weak hit to PF01661: Appr-1-p
           processing enzyme family
          Length = 912

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +1

Query: 244 QKTEAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPL 423
           Q++E +++    FE+ H +  E P QV ++  +     E + + GRA  V  + +    L
Sbjct: 299 QRSEFIKLGGPEFEV-HAVVLELPAQVCISRSVKRTGHEGNLQGGRAAAVVNKMLQSKEL 357

Query: 424 RRVNQ 438
            +VN+
Sbjct: 358 PKVNE 362


>At1g59590.1 68414.m06702 expressed protein
          Length = 211

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 534 KGSSNSYAIKKKDELERVAKSNR 602
           +GSS SYA+KKKD   +++  NR
Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196


>At5g01940.1 68418.m00113 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|P41035 Eukaryotic translation initiation factor 2
           subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
           Pfam profile PF01873: Domain found in IF2B/IF5
          Length = 231

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 54  ADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMHTSVSV 179
           A+G  T+C +   LCRT   + R   ++    LA M T VS+
Sbjct: 109 AEGTITVCLNFADLCRT---MHRKPDHVMKFLLAQMETKVSL 147


>At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family protein
           low similarity to SP|P24640|LIP3_MORSP Lipase 3
           precursor (EC 3.1.1.3) (Triacylglycerol lipase)
           {Moraxella sp}; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 328

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 15  YHKPPTFLKSSFSADGVATMCKSLI 89
           ++KPP ++ S F+ D +  MCK  +
Sbjct: 191 FYKPPIWIPSCFAMDYIHVMCKDYL 215


>At4g33450.1 68417.m04752 myb family transcription factor (MYB69)
           contains PFAM profile: Myb DNA binding domain PF00249;
           identical to cDNA  putative transcription factor (MYB69)
           mRNA, partial cds GI:3941495
          Length = 250

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -1

Query: 369 SRIFTGSRVDNGSHEYLQRVFSS*QVNNFKRMFDNTYGLSFLPLFRPCIIREFVRRSTIG 190
           +R+F G R DN    +   + +  +  NF     +T+  ++  +  P      + RS  G
Sbjct: 97  ARLFPG-RTDNAVKNHFHVIMARRKRENFSSTATSTFNQTWHTVLSPSSSLTRLNRSHFG 155

Query: 189 HWALRK-RLCAYLP 151
            W  RK + C   P
Sbjct: 156 LWRYRKDKSCGLWP 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,634
Number of Sequences: 28952
Number of extensions: 296870
Number of successful extensions: 671
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)