Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20505
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    33   0.038
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    29   0.62 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    29   0.82 
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    27   1.9  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   3.3  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    26   4.4  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    26   5.8  

>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 295 LLYQIGETQGQYGVGFIIKQHLKQYVEEF-IGISERIAIMNLNLPGYKKPWSIVQ 456
           L Y IGE  G YGV    K H+  ++EE+ +  +E I + ++  PG+ +  ++ Q
Sbjct: 656 LTYDIGEALGVYGVN--NKTHVHDFIEEYGLDANELIHVPSIQHPGHWETRTVFQ 708


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +1

Query: 403 AIMNLNLPGYKKPWSI 450
           ++ +LN+PGYK+PW +
Sbjct: 341 SVSDLNIPGYKQPWEL 356


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
 Frame = -1

Query: 500 LFIVSKFDCSVGEYICTIDHGFLYPGRFKFIIAMRSEIP-------MNSSTYCFKCCLII 342
           LF++  F C +G Y+ T      Y  +   ++  R EI         N S YC KC  + 
Sbjct: 351 LFVLISFTC-IGLYVRTAFQNPGYVDKIGAVVQRREEISKLLDKDLFNQSHYCLKCFQVK 409

Query: 341 NPTPY 327
            P  Y
Sbjct: 410 PPRSY 414


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 430 YKKPWSIVQIYSPTEQSNLETINNF 504
           Y KPW+++ +YS  +  N  T++ F
Sbjct: 563 YNKPWNLLVLYSLLQYENKLTVSQF 587


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 485 WKR*ITSTYFKRSHSRAYAQKPYSHGRLQ 571
           WKR + S   ++S S  Y++ PY + R++
Sbjct: 490 WKRELRSKKREKSSSSPYSRGPYKYNRIE 518


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = +3

Query: 510 ILNEAIQEHTHKNLIVMGDFNG-----QIGARRPGENAILGQYSYSNKTRSRNGE 659
           +L+   +EHTHKN+       G        ++  G   +    S SN   SRNGE
Sbjct: 453 VLSPEAKEHTHKNISPESSRFGTPSDPNSSSQSLGNEVLSRPNSNSNSAESRNGE 507


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 65  PPSRLVLEGESDHNPPTSKDNNHRKPV 145
           PP   V++  S + P  S D+ H KPV
Sbjct: 11  PPDSSVVDSTSSNFPNASNDSVHDKPV 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,344
Number of Sequences: 5004
Number of extensions: 66323
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)