Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20505
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0253 + 22416981-22416993,22417458-22417639,22417965-224181...    30   1.5  
08_02_0737 - 20572068-20572290,20572785-20572841,20573482-205736...    29   4.5  
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126...    29   4.5  

>03_05_0253 +
           22416981-22416993,22417458-22417639,22417965-22418148,
           22418241-22418315,22418481-22418590,22419411-22419629,
           22419713-22419868,22419996-22420232
          Length = 391

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 77  LVLEGESDHNPPTSK----DNNHRKPVIYIASLNVLTLGKEENLTELTYA 214
           ++L GES+ NP  S+    D NHRKP+      N+   G    + E T A
Sbjct: 13  VLLSGESNANPAASQQSQLDVNHRKPLQTFRPYNIAHRGSNGEIPEETTA 62


>08_02_0737 -
           20572068-20572290,20572785-20572841,20573482-20573672,
           20574566-20574700,20575722-20575871
          Length = 251

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 116 MLEGCGRFPPRGPVGLGEF 60
           +L G    PPRGP+GLG F
Sbjct: 34  VLRGRSGMPPRGPLGLGSF 52


>01_06_1275 -
           35910992-35911342,35912157-35912390,35912573-35912653,
           35913162-35913407,35913502-35913617,35914813-35915032
          Length = 415

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +1

Query: 343 IIKQHLKQYVEEFIGISERIAIMNLN-LPGYKKPWSIVQIYSPTEQSNLETINNFYLF*T 519
           ++ ++ +Q VE   G +E   + +   LPG  K        S T    L  I N  LF  
Sbjct: 80  VVAEYYQQQVEMLEGFNEMDTLTDRGFLPGMSKEEREKVARSETLAIRLSNIANMVLFAA 139

Query: 520 KPFKSIRTKTL*SWATSMAKL 582
           K + S+R+ +L   A+++  L
Sbjct: 140 KVYASVRSGSLAIIASTLDSL 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,292,967
Number of Sequences: 37544
Number of extensions: 382200
Number of successful extensions: 838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)