Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20505
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    44   8e-05
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    44   1e-04
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p...    29   2.3  
AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical ...    29   4.1  
AF016683-10|AAB66198.1|  405|Caenorhabditis elegans Hypothetical...    28   7.1  
Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U37430-6|AAB52672.1|  414|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
 Frame = +1

Query: 256 RRMGESITCHPD---YLLYQIGETQGQYGVGFIIKQHLKQYVEEFIGISERIAIMNLNLP 426
           +R  E+   H D     L +  E+    GVGFI++  L   + E   +S RI ++   + 
Sbjct: 152 KRAAEAHLIHHDGTGVFLGKRNESSVSGGVGFIVRSTLLPKIVEVRFLSHRIGLLTFKV- 210

Query: 427 GYKKPWSIVQIYSPTEQSNLETINNFYLF*TKPFKSIRTK 546
             K   +++Q+Y+PT  S+LE I +FY      F+  R+K
Sbjct: 211 SRKFNCTVIQVYAPTADSDLEEICDFYDSVEDVFRECRSK 250



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +3

Query: 513 LNEAIQEHTHKNLIVMGDFNGQIGARRPGENAILGQYSYSNKTRSRNGEKLQT 671
           + +  +E   K  +V+GDFN ++G R+  E  I G ++   + R+  GE L T
Sbjct: 240 VEDVFRECRSKYKLVIGDFNARMGCRQNNERYI-GPHAM--EPRNDTGELLAT 289


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/59 (35%), Positives = 35/59 (59%)
 Frame = +1

Query: 331 GVGFIIKQHLKQYVEEFIGISERIAIMNLNLPGYKKPWSIVQIYSPTEQSNLETINNFY 507
           GVGFI+K  L   + E + I  RI ++   +   K   +++Q+Y+PT  S L+ I++FY
Sbjct: 24  GVGFIVKSTLLPRITEVVFIDYRIGLITFKV-NRKWKCTVIQVYAPTAVSTLDEISDFY 81


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = +1

Query: 340 FIIKQHLKQYVEEFIGISERIAIMNLNLPGYKKPWSIVQIYSPTEQSNLETINNFYLF*T 519
           ++++  L   + E   +S RI ++   +   K   +++Q+Y+PT   +LE I +FY    
Sbjct: 12  YVVRSTLLPKIVEVRFLSHRIGLLTFKV-SRKFNCTVIQVYAPTADLDLEEICDFYDSVE 70

Query: 520 KPFKSIRTK 546
             F+  R+K
Sbjct: 71  DVFRECRSK 79



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +3

Query: 513 LNEAIQEHTHKNLIVMGDFNGQIGARRPGENAILGQYSYSNKTRSRNGEKLQT 671
           + +  +E   K  +V+GDFN ++G R+  E  I G ++   + R+  GE L T
Sbjct: 69  VEDVFRECRSKYKLVIGDFNARMGCRQNNERYI-GPHAM--EPRNDTGELLTT 118


>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical protein
            T08A11.2 protein.
          Length = 1322

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = +1

Query: 166  CTHLGKRRKSYGTDICAKIYQMGHNWFERRRRMGESITCHPDYLLYQIGETQGQYGVGFI 345
            C+ LG+R K+Y   IC  I    +N   + R+    +      +++   E +    +G +
Sbjct: 936  CSSLGRRAKAYIPQICGTILWRLNNKSAKVRQQAADLIARIAPVMHMCEEEKMMGHMGVV 995

Query: 346  IKQHLKQYVEEFIG 387
            + ++L +   E +G
Sbjct: 996  LYEYLGEEYPEVLG 1009


>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
            protein T08A11.2 protein.
          Length = 1322

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = +1

Query: 166  CTHLGKRRKSYGTDICAKIYQMGHNWFERRRRMGESITCHPDYLLYQIGETQGQYGVGFI 345
            C+ LG+R K+Y   IC  I    +N   + R+    +      +++   E +    +G +
Sbjct: 936  CSSLGRRAKAYIPQICGTILWRLNNKSAKVRQQAADLIARIAPVMHMCEEEKMMGHMGVV 995

Query: 346  IKQHLKQYVEEFIG 387
            + ++L +   E +G
Sbjct: 996  LYEYLGEEYPEVLG 1009


>AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical
           protein Y53F4B.1 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -3

Query: 363 F*MLFNNKSYPILALRLPYLVQ*IVWMTSNTFAHSSPSLKPIMSHLIDFSAYVSSVR 193
           F  ++NNK Y +   +   + + I W  +NT   S P+ K ++S L     +  S+R
Sbjct: 259 FLKMYNNKKYDMSGCKSNSICETIEWCLNNT-QESRPTFKQLLSKLNSRHTHYLSLR 314


>AF016683-10|AAB66198.1|  405|Caenorhabditis elegans Hypothetical
           protein K09F6.8 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 570 NGQIGARRPGENAILGQYSYSNKTR 644
           N Q+  R PGE  I G+++YS K R
Sbjct: 88  NAQVVERLPGEVLIDGRFNYSEKAR 112


>Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical
           protein F15A4.4 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 322 LASPLFGTVNSLDDK*YFRPFFSFAQTNYVPFDRF*RICQFRKIF 188
           LA P FG+ N L  + Y  P +     +YV + ++  +  F+ IF
Sbjct: 153 LALPFFGSWNLLLSRMYIFPSYGGFNASYVKYVQWASLSMFQSIF 197


>Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical
           protein D2085.4 protein.
          Length = 1001

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 346 IKQHLKQYVEEFIGISE--RIAIMNLNLPG 429
           +  HLKQY EE +  +E  R A +  NLPG
Sbjct: 336 VNNHLKQYCEEMLISNEFRRAACIYANLPG 365


>U37430-6|AAB52672.1|  414|Caenorhabditis elegans Hypothetical
           protein K09F5.1 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +2

Query: 446 LLYKYIHLQSNQ--IWKR*ITSTYFKRSHSRAYAQKPYSHGRLQW 574
           L + YI +  NQ  IWK    S  F       YAQ  Y H + +W
Sbjct: 369 LFFIYICVLDNQVSIWKPYYISQLFFELFPLRYAQVTYGHKKCKW 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,142,635
Number of Sequences: 27780
Number of extensions: 359089
Number of successful extensions: 850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)