Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20505
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    26   0.29 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.2  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 59  RTP-PSRLVLEGESDHNPPTSKDNNH 133
           R+P PS L  +   DHN   SK+N+H
Sbjct: 42  RSPSPSLLTSQPHQDHNKEKSKNNHH 67


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 419 FKFIIAMRSEIPMNSSTYCFKCCLIINP 336
           F F ++MRSE+P  S    +     +NP
Sbjct: 86  FYFFMSMRSELPWGSCNNYWNTKNCVNP 113


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 264 HSSPSLKPIMSHLIDFSAYVSSVRFS 187
           H+S + + +M  + DF+  V+S+R S
Sbjct: 308 HNSSNARFLMDSMFDFAERVNSLRLS 333


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 418 NLPGYKKPWSIVQIYSPTEQSN 483
           NL   +KPWS + I   T+  N
Sbjct: 85  NLQANEKPWSTLPIEDLTKSDN 106


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 418 NLPGYKKPWSIVQIYSPTEQSN 483
           NL   +KPWS + I   T+  N
Sbjct: 123 NLQANEKPWSTLPIEDLTKSDN 144


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 230 WDIIGLSEGEEWAKVL 277
           WD+  L+E E  AKVL
Sbjct: 15  WDLKNLTEAEYLAKVL 30


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 524 HSRAYAQKPYSHGRLQWPN 580
           HS    QKPY+   + +PN
Sbjct: 430 HSYKMHQKPYNKDEIIYPN 448


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 524 HSRAYAQKPYSHGRLQWPN 580
           HS    QKPY+   + +PN
Sbjct: 430 HSYKMHQKPYNKDEIIYPN 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,575
Number of Sequences: 438
Number of extensions: 4857
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)