Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20505
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34355.1 68415.m04205 nodulin-related contains 14 transmembra...    31   0.71 
At4g25570.1 68417.m03685 cytochrome B561 family protein contains...    29   2.8  
At5g64270.1 68418.m08074 splicing factor, putative similar to sp...    29   3.8  
At1g60140.1 68414.m06775 glycosyl transferase family 20 protein ...    28   5.0  
At4g10970.3 68417.m01785 expressed protein                             27   8.7  
At4g10970.2 68417.m01784 expressed protein                             27   8.7  
At4g10970.1 68417.m01783 expressed protein                             27   8.7  
At3g21970.1 68416.m02772 receptor-like protein kinase-related co...    27   8.7  
At1g76290.1 68414.m08860 AMP-dependent synthetase and ligase fam...    27   8.7  

>At2g34355.1 68415.m04205 nodulin-related contains 14 transmembrane
           domains; supported by tandem duplication of nodulin
           -related protein (TIGR_Ath1:At2g34350) [Arabidopsis
           thaliana]
          Length = 523

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 129 LLSLDVGGLWSLSPSRTSRLGGVRSFFVSLLTVSLVG 19
           L+ +  G  WSL P+ TS + G+R       T+S+ G
Sbjct: 415 LIGMAYGSQWSLMPTITSEIFGIRHMGTIYFTISIAG 451


>At4g25570.1 68417.m03685 cytochrome B561 family protein contains
           Pfam domain, PF03188: Cytochrome b561
          Length = 239

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/66 (21%), Positives = 32/66 (48%)
 Frame = +1

Query: 295 LLYQIGETQGQYGVGFIIKQHLKQYVEEFIGISERIAIMNLNLPGYKKPWSIVQIYSPTE 474
           +L+ I    G +G+    K H + ++     +   I I  ++L G++  +S +  + P  
Sbjct: 85  ILHAIALALGIFGICAAFKNHNESHIPNLYSLHSWIGIGVISLYGFQWVYSFIVFFFPGG 144

Query: 475 QSNLET 492
            +NL++
Sbjct: 145 STNLKS 150


>At5g64270.1 68418.m08074 splicing factor, putative similar to
            splicing factor 3B subunit 1 (Spliceosome associated
            protein 155) (SAP 155) (SF3b155) (Pre-mRNA splicing
            factor SF3b 155 kDa subunit) (146 kDa nuclear protein)
            SP:O57683 from [Xenopus laevis]
          Length = 1269

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +1

Query: 175  LGKRRKSYGTDICAKIYQMGHNWFERRRRMGESITCHPDYLLYQIGETQGQYGVGFIIKQ 354
            LG+R K Y   IC  I    +N   + R+    +      ++ Q GE Q    +G ++ +
Sbjct: 886  LGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYE 945

Query: 355  HLKQYVEEFIG 387
            +L +   E +G
Sbjct: 946  YLGEEYPEVLG 956


>At1g60140.1 68414.m06775 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein contains Pfam
           profile: PF02358 trehalose-phosphatase
          Length = 861

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 218 KSIKWDIIGLSEGEEWAKVLLVIQTIY 298
           KS  W+  GLS+  EW KV+  I  +Y
Sbjct: 666 KSSDWETSGLSDDLEWKKVVEPIMRLY 692


>At4g10970.3 68417.m01785 expressed protein
          Length = 217

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +2

Query: 428 DIKNRGLLYKYIHLQSNQIWKR*ITSTYFKRSHSRAYAQKPYSHGRLQWPNWSK---TPR 598
           D++      K  + Q NQ     +T+T  +++ S     +PY+ GR+   N S+    P 
Sbjct: 71  DVRQGAFAKKRSNFQGNQFP---VTTTVARKAASATPRGRPYNGGRMTNTNQSRFIAPPA 127

Query: 599 RKRNTRTIFI**QDQKQK 652
           + R ++  F+  Q Q+Q+
Sbjct: 128 QNRASQRGFVGKQQQQQR 145


>At4g10970.2 68417.m01784 expressed protein
          Length = 217

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +2

Query: 428 DIKNRGLLYKYIHLQSNQIWKR*ITSTYFKRSHSRAYAQKPYSHGRLQWPNWSK---TPR 598
           D++      K  + Q NQ     +T+T  +++ S     +PY+ GR+   N S+    P 
Sbjct: 71  DVRQGAFAKKRSNFQGNQFP---VTTTVARKAASATPRGRPYNGGRMTNTNQSRFIAPPA 127

Query: 599 RKRNTRTIFI**QDQKQK 652
           + R ++  F+  Q Q+Q+
Sbjct: 128 QNRASQRGFVGKQQQQQR 145


>At4g10970.1 68417.m01783 expressed protein
          Length = 217

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +2

Query: 428 DIKNRGLLYKYIHLQSNQIWKR*ITSTYFKRSHSRAYAQKPYSHGRLQWPNWSK---TPR 598
           D++      K  + Q NQ     +T+T  +++ S     +PY+ GR+   N S+    P 
Sbjct: 71  DVRQGAFAKKRSNFQGNQFP---VTTTVARKAASATPRGRPYNGGRMTNTNQSRFIAPPA 127

Query: 599 RKRNTRTIFI**QDQKQK 652
           + R ++  F+  Q Q+Q+
Sbjct: 128 QNRASQRGFVGKQQQQQR 145


>At3g21970.1 68416.m02772 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function that is usually associated with protein kinase
           domain Pfam:PF00069; similar to receptor-like protein
           kinase 4 (GI:13506745) and receptor-like protein kinase
           5 (GI:13506747) [Arabidopsis thaliana]
          Length = 264

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 289 DYLLYQIGETQGQYGVGFIIKQHLKQYVEEFIGISERIAIMNL-NLPGYK 435
           DYL +Q   TQG+Y  G   +++L Q +     +  R     + N+  YK
Sbjct: 33  DYLNHQCNNTQGRYTHGSTFEKNLNQVLHNISNLDLRYGYAYVSNVVAYK 82


>At1g76290.1 68414.m08860 AMP-dependent synthetase and ligase family
           protein similar to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 546

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 376 EFIGISERIAIMNLNLPGYKKPWSIVQIYSPTEQSNLETINNFYLF*TKPFKSIR 540
           EF+ ++E    +  N+   +KP  I    +PTEQS  E   +F       FK IR
Sbjct: 120 EFLSVAEESLSLLSNIE--EKPLIITITENPTEQSKYEQYEDFLSTGNPNFKPIR 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,362
Number of Sequences: 28952
Number of extensions: 333528
Number of successful extensions: 816
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)