Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20504
(671 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 142 7e-33
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 138 9e-32
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 126 4e-28
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 112 4e-27
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 114 2e-24
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 114 2e-24
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 108 1e-22
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 106 4e-22
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 104 2e-21
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 97 3e-19
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 94 2e-18
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 75 2e-12
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 60 5e-08
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 60 6e-08
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 54 2e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 53 7e-06
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 51 2e-05
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 48 3e-04
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 47 4e-04
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 44 0.003
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 44 0.003
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 43 0.008
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 42 0.010
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 42 0.018
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 41 0.031
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 40 0.055
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 40 0.055
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 40 0.072
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 38 0.17
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 38 0.17
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 37 0.39
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 35 1.6
UniRef50_O28859 Cluster: Surface layer protein B; n=1; Archaeogl... 34 2.7
UniRef50_A7LXT1 Cluster: Putative uncharacterized protein; n=1; ... 34 3.6
UniRef50_A5G642 Cluster: Beta-ketoacyl synthase; n=1; Geobacter ... 34 3.6
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 33 8.3
UniRef50_Q2R2L4 Cluster: Leucine Rich Repeat family protein, exp... 33 8.3
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 142 bits (344), Expect = 7e-33
Identities = 62/89 (69%), Positives = 73/89 (82%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTIRY
Sbjct: 90 ISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLG 522
PDPLIKVND+IQ+D+ T KI DFI G
Sbjct: 150 PDPLIKVNDTIQIDLETGKITDFIKFDTG 178
Score = 112 bits (269), Expect = 8e-24
Identities = 50/60 (83%), Positives = 55/60 (91%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
PKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E K+
Sbjct: 5 PKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Score = 97.1 bits (231), Expect = 3e-19
Identities = 37/55 (67%), Positives = 51/55 (92%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F++GNLCM+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+I
Sbjct: 174 KFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVI 228
Score = 50.0 bits (114), Expect = 5e-05
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = +2
Query: 170 ILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256
+ KI QR IK+DGKVRTD TYPAGFMDV
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDV 89
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 138 bits (335), Expect = 9e-32
Identities = 61/89 (68%), Positives = 72/89 (80%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRY
Sbjct: 90 ITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLG 522
PDPLI NDS+Q+DIA+ KI D+I G
Sbjct: 150 PDPLIHANDSVQVDIASGKITDYIKFDSG 178
Score = 111 bits (266), Expect = 2e-23
Identities = 51/60 (85%), Positives = 54/60 (90%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
PKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E K+
Sbjct: 5 PKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKI 64
Score = 109 bits (261), Expect = 8e-23
Identities = 48/55 (87%), Positives = 52/55 (94%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFII
Sbjct: 174 KFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFII 228
Score = 58.0 bits (134), Expect = 2e-07
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +2
Query: 170 ILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRR 271
+ KIV QRL+KVDGKVRTDPTYPAG+MDV L +
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEK 94
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 126 bits (305), Expect = 4e-28
Identities = 57/92 (61%), Positives = 70/92 (76%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
VSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRY
Sbjct: 90 VSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLGTCV 531
PDPLIK ND+I+LD+ KI++FI +G V
Sbjct: 150 PDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 102 bits (244), Expect = 9e-21
Identities = 44/55 (80%), Positives = 49/55 (89%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Score = 83.4 bits (197), Expect = 4e-15
Identities = 35/55 (63%), Positives = 45/55 (81%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ I
Sbjct: 174 KFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTI 228
Score = 49.6 bits (113), Expect = 7e-05
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256
+ ++ I+ QR I+VDGKVRTD TYPAGFMDV
Sbjct: 59 REVISILMQRHIQVDGKVRTDKTYPAGFMDV 89
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 112 bits (269), Expect = 8e-24
Identities = 50/60 (83%), Positives = 55/60 (91%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
PKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E K+
Sbjct: 5 PKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Score = 97.1 bits (231), Expect = 3e-19
Identities = 37/55 (67%), Positives = 51/55 (92%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F++ N+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+I
Sbjct: 206 KFDTSNMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVI 260
Score = 87.4 bits (207), Expect(2) = 4e-27
Identities = 36/54 (66%), Positives = 46/54 (85%)
Frame = +1
Query: 346 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 507
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFI
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFI 205
Score = 56.8 bits (131), Expect(2) = 4e-27
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAK 348
+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 90 ISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +2
Query: 170 ILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256
+ KI QR IK+DGKVRTD TYP GFMDV
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPTGFMDV 89
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 114 bits (275), Expect = 2e-24
Identities = 52/93 (55%), Positives = 71/93 (76%), Gaps = 1/93 (1%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+
Sbjct: 90 ISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRF 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLGT-CV 531
P+ LIK NDSI LD+ K++DFI S+G+ CV
Sbjct: 150 PNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
Score = 83.8 bits (198), Expect = 3e-15
Identities = 35/56 (62%), Positives = 45/56 (80%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 173
KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ ES
Sbjct: 6 KKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRES 61
Score = 50.4 bits (115), Expect = 4e-05
Identities = 21/55 (38%), Positives = 35/55 (63%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F G+LC++ G N+GR+G ++ GS IV +KD G +F+T+ N+F+I
Sbjct: 174 KFSIGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVI 228
Score = 39.1 bits (87), Expect = 0.096
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 158 DRKRILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLR 268
+++ L I+K+ I VDGKVR D +PAG MDV ++
Sbjct: 57 NQRESLNILKKNEIYVDGKVRADKNFPAGVMDVISIK 93
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 114 bits (274), Expect = 2e-24
Identities = 49/75 (65%), Positives = 59/75 (78%)
Frame = +1
Query: 298 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 477
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 478 IATTKIMDFISLSLG 522
+ T KI DF G
Sbjct: 136 LETGKITDFFKFDTG 150
Score = 107 bits (256), Expect = 3e-22
Identities = 47/60 (78%), Positives = 53/60 (88%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E K+
Sbjct: 5 PRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Score = 95.1 bits (226), Expect = 1e-18
Identities = 36/55 (65%), Positives = 50/55 (90%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+I
Sbjct: 146 KFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVI 200
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 108 bits (260), Expect = 1e-22
Identities = 48/88 (54%), Positives = 63/88 (71%)
Frame = +1
Query: 232 LSCWIYGCVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 411
L WI +SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 412 HDGRTIRYPDPLIKVNDSIQLDIATTKI 495
HD T+R+PD LIKVND+IQ+D+ T KI
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI 179
Score = 93.5 bits (222), Expect = 4e-18
Identities = 45/60 (75%), Positives = 51/60 (85%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
PK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+E K+
Sbjct: 16 PKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDEVKKI 74
Score = 67.3 bits (157), Expect = 3e-10
Identities = 25/46 (54%), Positives = 37/46 (80%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA 644
+F++GNLC++TGG N GR+G I +RERHP SFD H+KD+ ++F+
Sbjct: 183 KFDTGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFS 228
Score = 35.9 bits (79), Expect = 0.89
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +2
Query: 95 PQVARVLAPGDFPEESSEVCFDRKRILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRRL 274
P R P F + + KI Q IKVDGK+RTD P MDV + ++
Sbjct: 46 PHKLRECLPHIFLRNRLKYALTGDEVKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDKM 105
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 106 bits (255), Expect = 4e-22
Identities = 46/89 (51%), Positives = 63/89 (70%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
V IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+
Sbjct: 202 VRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRF 261
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLG 522
P+P IK+ D+++ D+ KI +F L G
Sbjct: 262 PNPEIKIGDTLKYDLVNNKIENFAHLESG 290
Score = 74.5 bits (175), Expect = 2e-12
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +3
Query: 513 ESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
ESGN+C I G N+GRVG I E+H GSFDI H+KD+ G+ FATRL N+F++
Sbjct: 288 ESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVL 340
Score = 56.0 bits (129), Expect = 8e-07
Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 29/85 (34%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGG-------------------------VYAPRPSTGP---- 95
PKKHLKR+NAPK+WML+KLGG +Y + +T P
Sbjct: 86 PKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQGP 145
Query: 96 HKLRECLPLVIFLRNRLKYALTGNE 170
HKLRE LPL + L+ RL YAL G +
Sbjct: 146 HKLRESLPLSVLLKERLNYALNGRD 170
Score = 34.7 bits (76), Expect = 2.1
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 185 KQRLIKVDGKVRTDPTYPAGFMDVSQLRRLMNCF 286
K++ + VDGKVR D YP G MDV ++ + F
Sbjct: 178 KEQNVFVDGKVRRDKGYPTGLMDVVRIEKTDQSF 211
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 104 bits (249), Expect = 2e-21
Identities = 44/89 (49%), Positives = 66/89 (74%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIRY
Sbjct: 90 LSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLG 522
P P ++ ND+I+L++ T KI+DF+ +G
Sbjct: 150 PHPELQANDTIKLNLETGKIVDFVKFDIG 178
Score = 93.1 bits (221), Expect = 6e-18
Identities = 38/56 (67%), Positives = 45/56 (80%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
P+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 5 PRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Score = 83.8 bits (198), Expect = 3e-15
Identities = 36/55 (65%), Positives = 44/55 (80%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F+ GN M+ GG +GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+I
Sbjct: 174 KFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVI 228
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRRLMNCF 286
+ + IVK R IK+DGK+RTD YP GFMDV + R F
Sbjct: 59 REVTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 97.5 bits (232), Expect = 3e-19
Identities = 40/89 (44%), Positives = 62/89 (69%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI Y
Sbjct: 104 IELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISY 163
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLG 522
DP ++V+D+++ +I T ++ I +G
Sbjct: 164 VDPSVRVHDALKFNIKTGEVESVIKFKVG 192
Score = 83.4 bits (197), Expect = 4e-15
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 173
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEA 75
Score = 69.3 bits (162), Expect = 8e-11
Identities = 30/55 (54%), Positives = 42/55 (76%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F+ G++ M+T G N+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+I
Sbjct: 188 KFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVI 242
Score = 47.2 bits (107), Expect = 4e-04
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRRLMNCF 286
K + IVK+RL+KVDGKVRT+ YP G MDV +L + F
Sbjct: 73 KEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 94.3 bits (224), Expect = 2e-18
Identities = 41/55 (74%), Positives = 45/55 (81%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNARE 57
Score = 83.0 bits (196), Expect = 6e-15
Identities = 41/92 (44%), Positives = 53/92 (57%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
V I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRY
Sbjct: 87 VEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRY 146
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLGTCV 531
PDP + D+I ++ K +D I G V
Sbjct: 147 PDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAV 178
Score = 65.3 bits (152), Expect = 1e-09
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = +3
Query: 519 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
G ++TGG N GR+G IV E HPG+F+I H+KD++G FATR N+F+I
Sbjct: 175 GKAVIVTGGANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVI 225
Score = 35.1 bits (77), Expect = 1.6
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 179 IVKQRLIKVDGKVRTDPTYPAGFMDVSQL 265
I++Q L+ VD R D YPAGFMDV ++
Sbjct: 61 ILRQGLVHVDNHPRRDGKYPAGFMDVVEI 89
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 74.9 bits (176), Expect = 2e-12
Identities = 35/88 (39%), Positives = 60/88 (68%)
Frame = +1
Query: 244 IYGCVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 423
++ VSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G
Sbjct: 86 LFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGL 144
Query: 424 TIRYPDPLIKVNDSIQLDIATTKIMDFI 507
+IR+ DP I + +I++ T+K++++I
Sbjct: 145 SIRFCDPAIDLGYTIKISNETSKVIEYI 172
Score = 65.3 bits (152), Expect = 1e-09
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 155
+ HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA
Sbjct: 6 RDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYA 55
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 60.1 bits (139), Expect = 5e-08
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*K 179
PK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E+ K
Sbjct: 8 PKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARK 67
Query: 180 L 182
+
Sbjct: 68 I 68
Score = 34.7 bits (76), Expect = 2.1
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Frame = +1
Query: 226 PYLSCWIYGCVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 405
P I V I +T + +R++ + R + I+ EEA+ K+C++K +
Sbjct: 84 PKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQI 143
Query: 406 VTHDGRT--IRYPDP------LIKVNDSIQLDI 480
HDG+ + DP + V DS+ L++
Sbjct: 144 TMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLEL 176
Score = 34.3 bits (75), Expect = 2.7
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 176 KIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRR 271
KI+ + I VDG VR +P +P G MDV ++ R
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPR 98
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 59.7 bits (138), Expect = 6e-08
Identities = 27/60 (45%), Positives = 38/60 (63%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
P+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E+ K+
Sbjct: 6 PRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKI 65
Score = 36.7 bits (81), Expect = 0.51
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +3
Query: 510 FESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
F G L ITGG+++G IV E DIV +++ G F T VFI+
Sbjct: 182 FGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIV 235
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 54.4 bits (125), Expect = 2e-06
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +3
Query: 12 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 173
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEA 57
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 52.8 bits (121), Expect = 7e-06
Identities = 30/87 (34%), Positives = 42/87 (48%)
Frame = +1
Query: 262 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 441
IE E +R++Y+ +G + + T E A KL KV+ P N L THDGRT D
Sbjct: 86 IEINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDD 145
Query: 442 PLIKVNDSIQLDIATTKIMDFISLSLG 522
KV D + + KI + I + G
Sbjct: 146 KSKKVGDVWAVSVPDMKISEIIKMQPG 172
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 51.2 bits (117), Expect = 2e-05
Identities = 29/92 (31%), Positives = 46/92 (50%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+ I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+ +
Sbjct: 91 IEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVII 148
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLGTCV 531
+ V D I L + +I + L G CV
Sbjct: 149 DENDYNVGDVIDLKVPDHEINEVFELKEGACV 180
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL* 185
+KHLK APK W + + +PS G H + L L + +R+ LK A E+ ++
Sbjct: 7 RKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRII 66
Query: 186 NNAS 197
N+ +
Sbjct: 67 NSGN 70
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 47.6 bits (108), Expect = 3e-04
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E+ KL
Sbjct: 7 QRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKL 65
Score = 45.2 bits (102), Expect = 0.001
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFII 671
+F G + +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF+I
Sbjct: 183 KFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVI 238
Score = 32.7 bits (71), Expect = 8.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 176 KIVKQRLIKVDGKVRTDPTYPAGFMDVSQL 265
K++ + +VDG VR D +P GFMDV ++
Sbjct: 64 KLISEGHFRVDGVVRKDYKFPVGFMDVIEV 93
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 47.2 bits (107), Expect = 4e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 173
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E+
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREA 56
Score = 36.7 bits (81), Expect = 0.51
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 179 IVKQRLIKVDGKVRTDPTYPAGFMDVSQL 265
I+ + +KVDGKVR D YP G MDV +L
Sbjct: 59 IIGKGYVKVDGKVRRDYKYPVGLMDVIEL 87
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 44.4 bits (100), Expect = 0.003
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 9 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 173
+HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E+
Sbjct: 10 RHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEA 64
Score = 34.7 bits (76), Expect = 2.1
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256
K +I+ R+I+VDG+V TD +P G MDV
Sbjct: 62 KEARRILASRVIEVDGRVVTDYKFPVGLMDV 92
Score = 34.3 bits (75), Expect = 2.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 283 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 429
+R++ D + I PEEA YKL +++R T HDGR +
Sbjct: 102 YRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNV 150
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 44.4 bits (100), Expect = 0.003
Identities = 21/90 (23%), Positives = 43/90 (47%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+S N+ +R++ G+ T++ I E K+CKV ++ ++T D R ++
Sbjct: 90 ISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKI 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLGT 525
IKV DS+ + +I+ + +G+
Sbjct: 150 NYAKIKVEDSLLIKTINDEIVYALKFEVGS 179
Score = 35.1 bits (77), Expect = 1.6
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+FE G+LC+IT G++LG + I + ++H++ G + +++ +I
Sbjct: 174 KFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVI 228
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 42.7 bits (96), Expect = 0.008
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 155
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLA 52
Score = 35.1 bits (77), Expect = 1.6
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 283 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 441
FR I DV G+ I+ + A KLC+V +T + HDGR I D
Sbjct: 94 FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSD 146
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 42.3 bits (95), Expect = 0.010
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E K+
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKI 61
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 41.5 bits (93), Expect = 0.018
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A E L
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 183 *NN 191
NN
Sbjct: 66 LNN 68
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 40.7 bits (91), Expect = 0.031
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +3
Query: 18 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL E K+
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKI 58
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 39.9 bits (89), Expect = 0.055
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRL 146
H KR++ PK+W + K + GPH + +PL + LR+ L
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDML 48
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 39.9 bits (89), Expect = 0.055
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK 149
H KRL+ PK+W + + G + GPH LPL + +R+ LK
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLK 48
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 39.5 bits (88), Expect = 0.072
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 158 DRKR-ILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRRLMNCFV 289
D++R I +I+ ++KVDG++ D +P GFMDV + L N ++
Sbjct: 53 DKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
Score = 35.9 bits (79), Expect = 0.89
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIR 432
+SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+TI
Sbjct: 87 LSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIV 145
Query: 433 YPDPLIKVNDSIQLDIATTKIMDFISLSLG 522
I +D + + I +I + + ++ G
Sbjct: 146 TDRKDINTSDVLLMKIPDLEIENVLKIAEG 175
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 38.3 bits (85), Expect = 0.17
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = -1
Query: 671 DYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASXDHTQVPRLKL 507
D EHV + R + ++ GVL VHN EG + LA D V + DH Q ++L
Sbjct: 53 DGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVEL 107
Score = 37.9 bits (84), Expect = 0.22
Identities = 26/84 (30%), Positives = 42/84 (50%)
Frame = -3
Query: 507 DEVHNLRSCDV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGD 328
D + +L DV +G+ D + V +GAA+++ R+ L QLVL D
Sbjct: 108 DRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLD 167
Query: 327 TVDCESALNIID*TKQFISLLN*D 256
V ES+L ++D + FI+L + D
Sbjct: 168 AVHNESSLGVVDEPEVFIALFDGD 191
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 38.3 bits (85), Expect = 0.17
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +1
Query: 244 IYGCVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 423
++ VSI K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 81 VFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGA 140
Query: 424 TIRYPDPLIKVNDSIQLDIAT 486
+ D K DS+ + + T
Sbjct: 141 NV-LADNTYKAKDSVVVTLGT 160
Score = 35.9 bits (79), Expect = 0.89
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 510 FESGNLCMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFII 671
+ GN+ MI GG++ G+VG IV R S ++ DS G F T VF++
Sbjct: 174 YAEGNVAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMV 229
Score = 35.1 bits (77), Expect = 1.6
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 9 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +E K+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKI 59
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 37.1 bits (82), Expect = 0.39
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 155
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYA 50
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 35.1 bits (77), Expect = 1.6
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 173
H+ R AP + K + R GPHK++E +PL I L+ LK T E+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREA 56
Score = 32.7 bits (71), Expect = 8.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 176 KIVKQRLIKVDGKVRTDPTYPAGFMDVSQL 265
+I+ + VDGKVR D YP G MDV ++
Sbjct: 58 RIIFDGKVLVDGKVRRDYKYPVGLMDVVEI 87
>UniRef50_O28859 Cluster: Surface layer protein B; n=1; Archaeoglobus
fulgidus|Rep: Surface layer protein B - Archaeoglobus
fulgidus
Length = 2425
Score = 34.3 bits (75), Expect = 2.7
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Frame = +1
Query: 160 PETNPENCETTPHKG*WES*D*PYLSCW--------IYGCVSIEKTNELFRLIYDVKGRF 315
PETNP N H+G + ++ + +GC+ +EK E +V+G++
Sbjct: 2322 PETNPTNLREGCHEGNFAEVQNVWVETYPSVTDKNPFWGCIILEKVGE--DRWEEVRGQY 2379
Query: 316 TIHRITPE------EAKYKLCKVKRVATGPKNVPY 402
+ R TP + Y+ C++ R TG ++V Y
Sbjct: 2380 NVKRSTPSSTSYTWDCGYRECQMTRSYTGSRDVTY 2414
>UniRef50_A7LXT1 Cluster: Putative uncharacterized protein; n=1;
Bacteroides ovatus ATCC 8483|Rep: Putative
uncharacterized protein - Bacteroides ovatus ATCC 8483
Length = 1346
Score = 33.9 bits (74), Expect = 3.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 262 LRHIHKSSR-ISRVSPNFPINLYEALFHNFQDSFPVKAYFRRFLRKITRGKHSRNLW 95
+ H++K SR + ++ +N+Y+ H F D FPV F+ IT + RN+W
Sbjct: 533 VNHVYKDSRGLVWIATREGLNVYDTRRHMFLDLFPVVEAKGNFIAAITEDQ-ERNMW 588
>UniRef50_A5G642 Cluster: Beta-ketoacyl synthase; n=1; Geobacter
uraniumreducens Rf4|Rep: Beta-ketoacyl synthase -
Geobacter uraniumreducens Rf4
Length = 7157
Score = 33.9 bits (74), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 438 RPTYQSQRFHPVRHRNYEDYGLHQFES 518
+P YQ QR HP+ H+N D+ +F S
Sbjct: 1477 KPEYQEQRIHPLLHQNASDFSEQRFSS 1503
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 32.7 bits (71), Expect = 8.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 533 DHXRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQ 658
DH R A HR R RL + H+G+ L+H++EQ
Sbjct: 60 DHQRLFKAALARHRKSRRDQRLHKSLRHKGIAQAELQHKIEQ 101
>UniRef50_Q2R2L4 Cluster: Leucine Rich Repeat family protein,
expressed; n=3; Oryza sativa|Rep: Leucine Rich Repeat
family protein, expressed - Oryza sativa subsp. japonica
(Rice)
Length = 1026
Score = 32.7 bits (71), Expect = 8.3
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 383 DLRMFRTW*RMMAA-PSATQTHLSKSTIPSS*TSQLRRL 496
DL R W +A PS T HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,396,923
Number of Sequences: 1657284
Number of extensions: 16181188
Number of successful extensions: 50116
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 47515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50088
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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