Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20504
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 142 5e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 142 5e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 140 1e-34
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.81
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 28 1.1
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 28 1.4
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 4.3
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 4.3
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 7.5
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.5
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 7.5
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.5
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 9.9
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 25 9.9
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.9
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 142 bits (343), Expect = 5e-35
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRY
Sbjct: 90 ISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFI 507
PDPLIKVND+I+L++ T KI FI
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFI 173
Score = 100 bits (240), Expect = 2e-22
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
PKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 5 PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 78.2 bits (184), Expect = 1e-15
Identities = 33/55 (60%), Positives = 44/55 (80%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+I
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVI 228
Score = 49.2 bits (112), Expect = 5e-07
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRR 271
+ + I+ QRLIKVDGKVRTD T+P GFMDV + +
Sbjct: 59 REVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEK 94
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 142 bits (343), Expect = 5e-35
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRY
Sbjct: 90 ISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFI 507
PDPLIKVND+I+L++ T KI FI
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFI 173
Score = 100 bits (240), Expect = 2e-22
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
PKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 5 PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 78.2 bits (184), Expect = 1e-15
Identities = 33/55 (60%), Positives = 44/55 (80%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+I
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVI 228
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRR 271
+ + I+ QRLI+VDGKVRTD T+P GFMDV + +
Sbjct: 59 REVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEK 94
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 140 bits (340), Expect = 1e-34
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRY
Sbjct: 90 ISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFI 507
PDPLIKVND+I+L++ T KI FI
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFI 173
Score = 100 bits (240), Expect = 2e-22
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
PKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 5 PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 78.2 bits (184), Expect = 1e-15
Identities = 33/55 (60%), Positives = 44/55 (80%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+I
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVI 228
Score = 48.8 bits (111), Expect = 7e-07
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256
+ + I+ QRLIKVDGKVRTD T+P GFMDV
Sbjct: 59 REVKAILMQRLIKVDGKVRTDSTFPTGFMDV 89
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 668 YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 570
Y V+ P EG LD+H+ A ++L GH+
Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 450 QSQRFHPVRHRNYEDYGLHQFES 518
++++ HPVRH YED FE+
Sbjct: 5 ENEKIHPVRHSKYEDKSKLPFET 27
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = +1
Query: 241 WIYGCVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK-RVATGPKNVPYLVTHD 417
W C +I + F + G + +I K LC V T PKN Y+V
Sbjct: 32 WCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDPKNTEYIVASG 91
Query: 418 GR 423
GR
Sbjct: 92 GR 93
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 417 WPHHPLPRPTYQSQR 461
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = -1
Query: 662 HVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASXDHTQVPRLKLMKSIIFVV 483
H V+PR + + G + + A S G TPQ D+ + LKL ++++
Sbjct: 284 HFVEPRTQALRPGARLTYKLREARSSKRGES---TPQSFREEDNNLMELLKLFGKGVYLL 340
Query: 482 AMSNWMESL 456
A E+L
Sbjct: 341 AQYKLREAL 349
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 251 DVSQLRRLMNCFV*SMMLRADSQSTVSPLRRLSTSCVK 364
++S+++ L+NCF+ S + D + LR L +K
Sbjct: 423 ELSRIKHLLNCFLNSSTVSLDVSMVLELLRDLKKKKIK 460
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.5
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +2
Query: 125 DFPEESSEVCFDRKRILKIVKQRLIKVDGKV--RTDP--TYPAGFMDVSQLRRLMNCFV* 292
DFP + + + +KR I+K+ L+ VD + R + T P+ +DV + N +
Sbjct: 100 DFPSQEAALVRKKKRDALILKKYLLNVDPSLSFRAEGLFTLPSDDLDVYEFFGGENLTLF 159
Query: 293 SMMLRADSQSTVSPLRRLSTSCVKSSVWRPD 385
+ +R D Q + L +L+ C+ S+ + D
Sbjct: 160 N-QVRVDCQCYIHYLPKLAV-CILSNFFLQD 188
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 420 PHHPLPRPTYQSQRFHPVRHRNYEDY 497
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 345 SLLRGDTVDCESALNIID*TKQ 280
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 259 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRTIR 432
S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H ++
Sbjct: 1721 SLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEMLK 1779
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 564 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNN 659
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 611
+FE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 423 HHPLPRPTYQSQRFHPVR 476
H PLPRP Q + PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,672
Number of Sequences: 5004
Number of extensions: 64042
Number of successful extensions: 186
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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