Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20504
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 125 3e-29
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 122 3e-28
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 121 5e-28
11_06_0087 - 19919224-19922304 33 0.27
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.84
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 30 1.9
10_07_0015 + 11813465-11813479,11814342-11814422,11814842-118149... 29 3.4
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.4
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 4.5
08_02_1196 - 25190040-25190065,25190224-25190302,25190554-251906... 28 5.9
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.9
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 28 7.8
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 125 bits (302), Expect = 3e-29
Identities = 56/92 (60%), Positives = 70/92 (76%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
VSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+DGRTIRY
Sbjct: 106 VSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRY 165
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLGTCV 531
PDPLIK ND+I++D+ T KI+DFI +G V
Sbjct: 166 PDPLIKANDTIKIDLETNKIVDFIKFDVGNIV 197
Score = 101 bits (241), Expect = 7e-22
Identities = 43/55 (78%), Positives = 48/55 (87%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT E
Sbjct: 22 KKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE 76
Score = 81.8 bits (193), Expect = 5e-16
Identities = 33/55 (60%), Positives = 44/55 (80%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F+ GN+ M+TGGRN GRVG I SRE+H GSF+ +H++D+ GH FATR+ NVF I
Sbjct: 190 KFDVGNIVMVTGGRNTGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTI 244
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRR 271
+ ++ I+ QR + VDGKVRTD TYPAGFMDV + +
Sbjct: 75 REVISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAK 110
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 122 bits (294), Expect = 3e-28
Identities = 53/92 (57%), Positives = 69/92 (75%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRY
Sbjct: 90 ISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLGTCV 531
PDPLIK ND+I++D+ T KI+DFI +G V
Sbjct: 150 PDPLIKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 101 bits (243), Expect = 4e-22
Identities = 43/55 (78%), Positives = 49/55 (89%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Score = 81.4 bits (192), Expect = 6e-16
Identities = 33/55 (60%), Positives = 44/55 (80%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF I
Sbjct: 174 KFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTI 228
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256
+ ++ I+ QR + VDGKVRTD TYPAGFMDV
Sbjct: 59 REVISILMQRHVLVDGKVRTDKTYPAGFMDV 89
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 121 bits (292), Expect = 5e-28
Identities = 52/92 (56%), Positives = 69/92 (75%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRY
Sbjct: 90 ISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLGTCV 531
PDP+IK ND+I++D+ T KI+DFI +G V
Sbjct: 150 PDPIIKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 101 bits (243), Expect = 4e-22
Identities = 43/55 (78%), Positives = 49/55 (89%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 170
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Score = 81.0 bits (191), Expect = 8e-16
Identities = 33/55 (60%), Positives = 44/55 (80%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF I
Sbjct: 174 KFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTI 228
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +2
Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256
+ ++ I+ QR + VDGKVRTD TYPAGFMDV
Sbjct: 59 REVISILMQRHVLVDGKVRTDKTYPAGFMDV 89
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 32.7 bits (71), Expect = 0.27
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 383 DLRMFRTW*RMMAA-PSATQTHLSKSTIPSS*TSQLRRL 496
DL R W +A PS T HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 135 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 34
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 667 MNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLR 545
+N +F L V L+CT+ GC + +VP P++R
Sbjct: 213 LNAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>10_07_0015 +
11813465-11813479,11814342-11814422,11814842-11814951,
11815553-11815608,11816086-11816180,11817021-11817126,
11817261-11817577,11817666-11817848,11817976-11818173,
11819029-11819346,11819721-11819813
Length = 523
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 107 RVLAPGDFPEESSEVCFDRKRILKIVK 187
+VL G P+ESSEV D ILK+++
Sbjct: 468 KVLDEGSSPQESSEVTCDENAILKVME 494
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 148 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 20
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 565 APSCPARDI--PAPSTLCTSRTPRDTPSP 645
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>08_02_1196 -
25190040-25190065,25190224-25190302,25190554-25190646,
25190761-25190892,25191578-25191721,25192941-25193150,
25194915-25195406
Length = 391
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 646 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPD 515
V KV PV+SL C + C+S + + PVI+ + D
Sbjct: 165 VLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYID 208
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 283 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 387
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 642 RRCVPWSP*CA--QCRRSRDVSRGTRWCPHAPSY 547
+RC+P S A +CR+SR S+ W P+ S+
Sbjct: 423 QRCLPESLRAAVQRCRQSRPASKVVEWAPYRHSF 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,062,784
Number of Sequences: 37544
Number of extensions: 477219
Number of successful extensions: 1575
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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