Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20504
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             130   1e-30

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  130 bits (314), Expect = 1e-30
 Identities = 58/89 (65%), Positives = 71/89 (79%)
 Frame = +1

Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
           V+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTIRY
Sbjct: 514 VTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRY 573

Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLG 522
           PDP IKVND++ +DI T K++D+I    G
Sbjct: 574 PDPNIKVNDTVVIDIKTGKVIDYIKFDTG 602



 Score =  114 bits (274), Expect = 7e-26
 Identities = 50/60 (83%), Positives = 54/60 (90%)
 Frame = +3

Query: 3   PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
           PKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E  K+
Sbjct: 429 PKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKI 488



 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 35/55 (63%), Positives = 47/55 (85%)
 Frame = +3

Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
           +F++GN+ M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+I
Sbjct: 598 KFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVI 652



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 25/31 (80%), Positives = 28/31 (90%)
 Frame = +2

Query: 164 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDV 256
           + + KIVKQRLIK+DGKVRTD TYPAGFMDV
Sbjct: 483 EEVKKIVKQRLIKIDGKVRTDTTYPAGFMDV 513


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,916,915
Number of Sequences: 59808
Number of extensions: 529239
Number of successful extensions: 1528
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)