Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20504
(671 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D16257-1|BAA03786.1| 261|Drosophila melanogaster ribosomal prot... 138 5e-33
BT011369-1|AAR96161.1| 261|Drosophila melanogaster RE57333p pro... 138 5e-33
AE014296-2240|AAF49846.1| 261|Drosophila melanogaster CG11276-P... 138 5e-33
AE014296-2239|AAF49847.1| 261|Drosophila melanogaster CG11276-P... 138 5e-33
AF434686-1|AAL28130.1| 1573|Drosophila melanogaster guanine nucl... 30 3.3
AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipp... 29 7.6
AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,... 29 7.6
AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,... 29 7.6
>D16257-1|BAA03786.1| 261|Drosophila melanogaster ribosomal protein
S4 protein.
Length = 261
Score = 138 bits (335), Expect = 5e-33
Identities = 61/89 (68%), Positives = 72/89 (80%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRY
Sbjct: 90 ITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLG 522
PDPLI NDS+Q+DIA+ KI D+I G
Sbjct: 150 PDPLIHANDSVQVDIASGKITDYIKFDSG 178
Score = 109 bits (261), Expect = 4e-24
Identities = 50/60 (83%), Positives = 53/60 (88%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
PKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+ FLRNRLKYAL G E K+
Sbjct: 5 PKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAEVTKI 64
Score = 109 bits (261), Expect = 4e-24
Identities = 48/55 (87%), Positives = 52/55 (94%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFII
Sbjct: 174 KFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFII 228
Score = 54.4 bits (125), Expect = 1e-07
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +2
Query: 170 ILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRR 271
+ KIV QRL+KV GKVRTDPTYPAG+MDV L +
Sbjct: 61 VTKIVMQRLVKVYGKVRTDPTYPAGYMDVITLEK 94
>BT011369-1|AAR96161.1| 261|Drosophila melanogaster RE57333p
protein.
Length = 261
Score = 138 bits (335), Expect = 5e-33
Identities = 61/89 (68%), Positives = 72/89 (80%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRY
Sbjct: 90 ITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLG 522
PDPLI NDS+Q+DIA+ KI D+I G
Sbjct: 150 PDPLIHANDSVQVDIASGKITDYIKFDSG 178
Score = 111 bits (266), Expect = 1e-24
Identities = 51/60 (85%), Positives = 54/60 (90%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
PKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E K+
Sbjct: 5 PKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKI 64
Score = 109 bits (261), Expect = 4e-24
Identities = 48/55 (87%), Positives = 52/55 (94%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFII
Sbjct: 174 KFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFII 228
Score = 58.0 bits (134), Expect = 1e-08
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +2
Query: 170 ILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRR 271
+ KIV QRL+KVDGKVRTDPTYPAG+MDV L +
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEK 94
>AE014296-2240|AAF49846.1| 261|Drosophila melanogaster CG11276-PB,
isoform B protein.
Length = 261
Score = 138 bits (335), Expect = 5e-33
Identities = 61/89 (68%), Positives = 72/89 (80%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRY
Sbjct: 90 ITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLG 522
PDPLI NDS+Q+DIA+ KI D+I G
Sbjct: 150 PDPLIHANDSVQVDIASGKITDYIKFDSG 178
Score = 111 bits (266), Expect = 1e-24
Identities = 51/60 (85%), Positives = 54/60 (90%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
PKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E K+
Sbjct: 5 PKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKI 64
Score = 109 bits (261), Expect = 4e-24
Identities = 48/55 (87%), Positives = 52/55 (94%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFII
Sbjct: 174 KFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFII 228
Score = 58.0 bits (134), Expect = 1e-08
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +2
Query: 170 ILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRR 271
+ KIV QRL+KVDGKVRTDPTYPAG+MDV L +
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEK 94
>AE014296-2239|AAF49847.1| 261|Drosophila melanogaster CG11276-PA,
isoform A protein.
Length = 261
Score = 138 bits (335), Expect = 5e-33
Identities = 61/89 (68%), Positives = 72/89 (80%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRY
Sbjct: 90 ITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRY 149
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLG 522
PDPLI NDS+Q+DIA+ KI D+I G
Sbjct: 150 PDPLIHANDSVQVDIASGKITDYIKFDSG 178
Score = 111 bits (266), Expect = 1e-24
Identities = 51/60 (85%), Positives = 54/60 (90%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
PKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E K+
Sbjct: 5 PKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKI 64
Score = 109 bits (261), Expect = 4e-24
Identities = 48/55 (87%), Positives = 52/55 (94%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+F+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFII
Sbjct: 174 KFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFII 228
Score = 58.0 bits (134), Expect = 1e-08
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +2
Query: 170 ILKIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRR 271
+ KIV QRL+KVDGKVRTDPTYPAG+MDV L +
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEK 94
>AF434686-1|AAL28130.1| 1573|Drosophila melanogaster guanine
nucleotide exchange factor protein.
Length = 1573
Score = 29.9 bits (64), Expect = 3.3
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +3
Query: 462 FHPVRHRNYEDYGLHQFESGNLCMITGGRNLGRVGT 569
++ ++H+ E+ H+ E+G + M+T R++G VGT
Sbjct: 224 YYRIQHQGEENTRRHEDENGFVVMVTELRSIGGVGT 259
>AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipped-B
protein.
Length = 2077
Score = 28.7 bits (61), Expect = 7.6
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -3
Query: 426 GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 268
G ++RY + I +S R +LD+ +V + LR DTV+ +NIID Q I L
Sbjct: 888 GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942
>AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,
isoform F protein.
Length = 2077
Score = 28.7 bits (61), Expect = 7.6
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -3
Query: 426 GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 268
G ++RY + I +S R +LD+ +V + LR DTV+ +NIID Q I L
Sbjct: 888 GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942
>AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,
isoform E protein.
Length = 2077
Score = 28.7 bits (61), Expect = 7.6
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -3
Query: 426 GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 268
G ++RY + I +S R +LD+ +V + LR DTV+ +NIID Q I L
Sbjct: 888 GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,648,730
Number of Sequences: 53049
Number of extensions: 796494
Number of successful extensions: 2378
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2378
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -