Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20504
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 113 1e-25
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 26 0.95
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 29 4.0
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 5.3
U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical pr... 28 6.9
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 113 bits (272), Expect = 1e-25
Identities = 52/89 (58%), Positives = 64/89 (71%)
Frame = +1
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
V+IE+TNE FR++YD KGR+ +HRI EA +KLCKVK V T K VP L T DGRTIRY
Sbjct: 89 VAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRY 148
Query: 436 PDPLIKVNDSIQLDIATTKIMDFISLSLG 522
PDP +KVND+I +I+T KI D + G
Sbjct: 149 PDPHVKVNDTIVFNISTQKITDSVKFEPG 177
Score = 95.9 bits (228), Expect = 2e-20
Identities = 44/60 (73%), Positives = 49/60 (81%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 182
PKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E+ K+
Sbjct: 4 PKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKI 63
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +3
Query: 507 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 671
+FE GNL +TGGRN+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF+I
Sbjct: 173 KFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVI 227
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 176 KIVKQRLIKVDGKVRTDPTYPAGFMDVSQLRRLMNCF 286
KI+ QR+++VDGKVRT +P GFMDV + R F
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 26.2 bits (55), Expect(2) = 0.95
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 554 GACGHHRVPRETSRLLRHCAHQGLHGTH 637
G+ G H T L H H G HGTH
Sbjct: 649 GSHGVHHGHHGTHHSLAHHGHHGGHGTH 676
Score = 25.0 bits (52), Expect(2) = 9.8
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = +2
Query: 566 HHRVPRETSRLLRHCAHQGLHGTH 637
HH P H H G HG+H
Sbjct: 474 HHHAPAHHGHHGEHGTHHGHHGSH 497
Score = 23.0 bits (47), Expect(2) = 0.95
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +2
Query: 611 AHQGLHGTHLRHEVEQRVHN 670
AH G HG H H H+
Sbjct: 684 AHHGHHGAHHEHGAHHGAHH 703
Score = 20.6 bits (41), Expect(2) = 9.8
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +2
Query: 611 AHQGLHGTHLRHEVEQRVHN 670
AH G HG H H H+
Sbjct: 537 AHHGHHGEHGTHHGHHGSHH 556
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +1
Query: 307 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 438
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 423 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 506
HH PTY F+P H++Y+ + L+
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -1
Query: 464 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 300
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical
protein T19D12.10 protein.
Length = 455
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 241 WIYGCVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 420
++YG V+ T F D +HR + K+ K V +G K+VPYL
Sbjct: 190 YLYGGVAFLVTTAFFAFFRDSA---QVHRNVSVKELEKISAGKTVTSGRKSVPYLAVCKN 246
Query: 421 RTI 429
+ I
Sbjct: 247 KVI 249
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,109,751
Number of Sequences: 27780
Number of extensions: 379445
Number of successful extensions: 1165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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