Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20503
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    28   1.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   3.1  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    27   3.1  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    25   9.4  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.4  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   9.4  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   9.4  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 202 NFFSQRLAGYKRLCWQTSLEIKSRPVNGFDCKRTEVS 312
           +FF  RL GY    + T L + S+ V G+DC RT ++
Sbjct: 201 SFFFSRLPGY----FGTYLGLTSQIVKGYDCLRTGIA 233


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 129 PFQWSWLSVSTIADVRRLTSNRHYSRFVMSLIHKNIKMM 13
           P  + WLS+  IA + R      Y+R +  L+  N K +
Sbjct: 605 PVAFGWLSIFAIARIYRCILLIPYTRKIAKLLFSNFKQL 643


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = -3

Query: 315 PTYFSSFTIKS----INWSRLNFQ*GLP--TEPFIPSQSLTEEISPNGTCKEP 175
           PT  S F I++      +  LN Q  LP  ++P     SLT+ ++PNG   +P
Sbjct: 308 PTVASGFGIQNQPQQSAFQNLNTQFSLPNNSQPVFGHTSLTQPVNPNGFTVQP 360


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 513 KVENFFEYWITYVI**IYFCGLEITRSQIASIILHPLF 400
           +V NFF+ WI  +I   +F GL I  ++      +P F
Sbjct: 197 EVHNFFQNWIRDLIQTYHFDGLRIDTAKHVQKEFYPPF 234


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
 Frame = -3

Query: 249 LPTE---PFIPS--QSLTEEISPNGTCK 181
           LPTE    F+P     LT+ ++PNGTC+
Sbjct: 204 LPTEFLTTFLPGIVSGLTKGLAPNGTCQ 231


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 314 PLTSVLLQSNPLTGLDLISSEVCQQSLLYPANL*LKKFHQME 189
           PL   L +S+    +D + S VC  S +YP+N+    FH+++
Sbjct: 496 PLVKSLDKSSSEVIIDEVISLVCDLSWIYPSNV----FHEVK 533


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 552 RKIFQSPL*CVHHKVENFFEYWITYVI 472
           RK++Q  L  + HK   F + W+ Y +
Sbjct: 383 RKVYQEALKLIPHKKFTFAKLWLMYAM 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,417
Number of Sequences: 5004
Number of extensions: 62147
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)