Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20503
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0527 - 4177928-4178235,4178849-4181438                           30   1.8  
07_03_1631 - 28258897-28259984,28260518-28260772,28260861-282609...    29   3.2  
02_02_0392 - 9649858-9650405,9650499-9650670,9650788-9650926,965...    29   3.2  
05_04_0203 + 19016547-19016860,19017020-19017169,19017946-190180...    29   4.2  
02_02_0396 - 9756993-9757540,9757590-9757809,9757929-9758046,975...    28   5.6  
01_05_0752 - 24909954-24910502,24914620-24914786,24914916-249149...    28   7.4  

>12_01_0527 - 4177928-4178235,4178849-4181438
          Length = 965

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/37 (35%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
 Frame = -3

Query: 111 LSVSTIADVRRLTSNRH-YSRFVMSLIHKNIKMMNMT 4
           +SVS +A + R  +N++ ++ F+ S I KN+KM++++
Sbjct: 276 VSVSNVASLARFAANQNNFTGFIPSGITKNVKMLDLS 312


>07_03_1631 -
           28258897-28259984,28260518-28260772,28260861-28260975,
           28261097-28261149,28261238-28261498,28262122-28262175,
           28262294-28262536,28262830-28263073,28263877-28263909
          Length = 781

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/48 (22%), Positives = 27/48 (56%)
 Frame = +3

Query: 453 RRNRFIISHM*SNIQKSSRLYDVHIIVAIGKFCELRAQKILDKYSFRN 596
           R  R I+ +   ++QK    ++ H++++I KF ++ A++     S+ +
Sbjct: 587 RMYRCIVRYGYKDVQKDDENFENHLVMSIAKFIQMEAEEAASSGSYES 634


>02_02_0392 -
           9649858-9650405,9650499-9650670,9650788-9650926,
           9651113-9651334,9651422-9651495,9653042-9653661,
           9653810-9653965,9655250-9655347,9655443-9655534,
           9655891-9655977
          Length = 735

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 352 EPNKFFESSFVYNYLPEQWMKNNGCNLTPGDFKAAEIDSLYHI 480
           EPNK  +   VY+  P+ + K   C+L P +   + +  LY +
Sbjct: 585 EPNKAIDPGLVYDIDPKDYTKFFNCSLDPQEDCKSYMGKLYQL 627


>05_04_0203 +
           19016547-19016860,19017020-19017169,19017946-19018081,
           19018222-19018323,19018556-19018675,19018800-19018880,
           19019041-19019381,19020296-19020589,19020701-19021025,
           19021167-19021400,19021506-19021760
          Length = 783

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 226 QPISD*RNFTKWNLQGTRCYPSS 158
           QPI+D   F KW L+GTR  P S
Sbjct: 31  QPINDRVYFPKWYLKGTRSSPRS 53


>02_02_0396 -
           9756993-9757540,9757590-9757809,9757929-9758046,
           9758156-9758431,9758569-9758609
          Length = 400

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 352 EPNKFFESSFVYNYLPEQWMKNNGCNLTPGDFKAAEIDSLYHI 480
           +P+K  +   VY+  P+++ K   C L P D   + +  LY +
Sbjct: 250 DPDKSIDPGLVYDIDPKEYTKFFNCTLGPKDDCESYVGQLYQL 292


>01_05_0752 -
           24909954-24910502,24914620-24914786,24914916-24914979,
           24915472-24915597,24915673-24915943,24916032-24916287,
           24916386-24916754,24916850-24916891,24917474-24917682,
           24918074-24918109,24918509-24918918,24919314-24919438,
           24920267-24920333,24921596-24921652
          Length = 915

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 286 FDCKRTEVSGKRFWGLFKNLCGEPNK 363
           FD ++ +V G  FW L +NL   P K
Sbjct: 606 FDFRQGDVKGNPFWKLVRNLLKTPGK 631


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,042,504
Number of Sequences: 37544
Number of extensions: 344905
Number of successful extensions: 691
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)