Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20503
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19)                   88   7e-18
SB_7992| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)             29   3.3  
SB_13957| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_226| Best HMM Match : Tektin (HMM E-Value=0)                        29   3.3  
SB_31654| Best HMM Match : Pox_F16 (HMM E-Value=5)                     29   4.3  
SB_23218| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)               27   9.9  
SB_17997| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19)
          Length = 351

 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 37/86 (43%), Positives = 52/86 (60%)
 Frame = +1

Query: 259 EIKSRPVNGFDCKRTEVSGKRFWGLFKNLCGEPNKFFESSFVYNYLPEQWMKNNGCNLTP 438
           E   RP+ G DCKR+EVSG R WGL K LC  P  FF S F++NY P  +M  +G N+TP
Sbjct: 218 EHPKRPILGLDCKRSEVSGSRLWGLIKQLCKTPEVFFSSCFIHNYCPLVFMNESGKNITP 277

Query: 439 GDFKAAEIDSLYHICDPIFKKVLDFM 516
            +    +   LY+ICD    ++++ +
Sbjct: 278 PNLPVEQRKQLYNICDQALIEMVELL 303



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 188 VPFGEISSVRDWLGIKGSVGKP 253
           VPFG+ S V+DWL I G V KP
Sbjct: 194 VPFGDTSFVKDWLEIDGEVRKP 215


>SB_7992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 7   HIHHLNIFMN*AHHKPGVVAIAREAPNVCNGTD*QPRP 120
           H+  +N F+N  + + G     + AP+ CNGT  +PRP
Sbjct: 114 HVSDINSFLN-QYVRQGGANKDQFAPDFCNGTSGEPRP 150


>SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)
          Length = 901

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 256 LEIKSRPVNGFDCKRTEVSGKRFWGLFKNLCGEPNKF-FESSFVYNY 393
           L ++  P     C  TE+ G R W +   + G    F +ESS+  N+
Sbjct: 397 LNLRDAPHTRVYCHMTEICGSRGWTIIMKIDGREKTFKYESSYWKNH 443



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 256 LEIKSRPVNGFDCKRTEVSGKRFWGLFKNLCGEPNKF-FESSFVYNY 393
           L ++  P     C  TE+ G R W +   + G    F +ESS+  N+
Sbjct: 692 LNLRDAPHTRVYCHMTEICGSRGWTIIMKIDGRETTFKYESSYWENH 738


>SB_13957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +1

Query: 226 GYKRLCWQTSLEIKSRPVNG---FDCKRT-EVSGKRFWGLFKNLCGEPNKFFE 372
           G +RL WQT   IKS PV G   FD K T   S +   G+   L  +P + FE
Sbjct: 47  GNRRLLWQTRTAIKS-PVAGDRAFDKKNTRRYSFESLNGIIAALAEKPREKFE 98


>SB_226| Best HMM Match : Tektin (HMM E-Value=0)
          Length = 534

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +1

Query: 271 RPVNGFDCKRTEVSGKRFWGLFKNLCGEPNKFFESSFVYNYLPEQWMKNNGCNLTPGDFK 450
           RP+     +  E   K   G    L   P     S  ++ Y P+QW  +N  N++ G+ +
Sbjct: 51  RPMTMSMSRSYEFPSKILNGSSSGLEHLPYTAVSSRAIHKYSPQQWRSSNMLNVSSGEKE 110

Query: 451 AAEIDSLYHIC 483
            A  + L   C
Sbjct: 111 RATAERLRDEC 121


>SB_31654| Best HMM Match : Pox_F16 (HMM E-Value=5)
          Length = 256

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -3

Query: 567 FVRVIRKIFQSPL*C-VHHKVENFFEYWITYVI**IYFCGLEITRSQIASIIL 412
           F R+ RK+FQ+   C +   + +FFE  +T  +  +YFCG  I   + A++IL
Sbjct: 119 FYRISRKVFQN---CKISVSIGSFFED-VTDDLATLYFCGFIILIKKTANLIL 167


>SB_23218| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)
          Length = 557

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 391 YLPEQWMKNNGCNLTPGDFKAAEIDSLYHICDPIFKKVL 507
           +LP + + + GC   P  +K  +ID LY + D  F  +L
Sbjct: 316 WLPTKPIYSKGCVRLPTQYKDRKIDLLYLVVDEEFTPLL 354


>SB_17997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 191 PFGEISSVRD--WLGIKGSVGKPHWKLSLDQLMDLIVK 298
           P GEI    +  W G+  +  KP W+L +D+++  I +
Sbjct: 606 PRGEIEDYANKMWSGLVKAYYKPRWELFIDEMVSAIAQ 643


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,210,519
Number of Sequences: 59808
Number of extensions: 415312
Number of successful extensions: 1003
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)