Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20503
         (647 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK222473-1|BAD96193.1|  270|Homo sapiens single-strand selective...    83   6e-16
AK001235-1|BAA91571.1|  270|Homo sapiens protein ( Homo sapiens ...    83   6e-16
AF489699-1|AAL86910.1|  270|Homo sapiens SMUG1 protein.                83   6e-16
AF125182-1|AAD17301.1|  270|Homo sapiens single-strand selective...    83   6e-16
BC105607-1|AAI05608.1|  177|Homo sapiens SMUG1 protein protein.        38   0.041
BC088352-1|AAH88352.1|  177|Homo sapiens SMUG1 protein protein.        38   0.041
BC000417-1|AAH00417.1|  177|Homo sapiens SMUG1 protein protein.        38   0.041
AL109806-4|CAC03741.2|  308|Homo sapiens chromosome 20 open read...    30   6.2  
AK131203-1|BAD18395.1|  430|Homo sapiens 4.1.150).  protein.           30   6.2  

>AK222473-1|BAD96193.1|  270|Homo sapiens single-strand selective
           monofunctional uracil DNA glycosylase variant protein.
          Length = 270

 Score = 83.4 bits (197), Expect = 6e-16
 Identities = 36/76 (47%), Positives = 48/76 (63%)
 Frame = +1

Query: 259 EIKSRPVNGFDCKRTEVSGKRFWGLFKNLCGEPNKFFESSFVYNYLPEQWMKNNGCNLTP 438
           E   RPV G +C ++EVSG RFWG F+NLCG+P  FF   FV+N  P  ++  +G NLTP
Sbjct: 120 EHPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFHHCFVHNLCPLLFLAPSGRNLTP 179

Query: 439 GDFKAAEIDSLYHICD 486
            +  A + + L  ICD
Sbjct: 180 AELPAKQREQLLGICD 195



 Score = 37.5 bits (83), Expect = 0.041
 Identities = 16/22 (72%), Positives = 17/22 (77%)
 Frame = +2

Query: 188 VPFGEISSVRDWLGIKGSVGKP 253
           VPFGE+S VRDWLGI G V  P
Sbjct: 96  VPFGEVSMVRDWLGIVGPVLTP 117


>AK001235-1|BAA91571.1|  270|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10373 fis, clone NT2RM2001935. ).
          Length = 270

 Score = 83.4 bits (197), Expect = 6e-16
 Identities = 36/76 (47%), Positives = 48/76 (63%)
 Frame = +1

Query: 259 EIKSRPVNGFDCKRTEVSGKRFWGLFKNLCGEPNKFFESSFVYNYLPEQWMKNNGCNLTP 438
           E   RPV G +C ++EVSG RFWG F+NLCG+P  FF   FV+N  P  ++  +G NLTP
Sbjct: 120 EHPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFHHCFVHNLCPLLFLAPSGRNLTP 179

Query: 439 GDFKAAEIDSLYHICD 486
            +  A + + L  ICD
Sbjct: 180 AELPAKQREQLLGICD 195



 Score = 37.5 bits (83), Expect = 0.041
 Identities = 16/22 (72%), Positives = 17/22 (77%)
 Frame = +2

Query: 188 VPFGEISSVRDWLGIKGSVGKP 253
           VPFGE+S VRDWLGI G V  P
Sbjct: 96  VPFGEVSMVRDWLGIVGPVLTP 117


>AF489699-1|AAL86910.1|  270|Homo sapiens SMUG1 protein.
          Length = 270

 Score = 83.4 bits (197), Expect = 6e-16
 Identities = 36/76 (47%), Positives = 48/76 (63%)
 Frame = +1

Query: 259 EIKSRPVNGFDCKRTEVSGKRFWGLFKNLCGEPNKFFESSFVYNYLPEQWMKNNGCNLTP 438
           E   RPV G +C ++EVSG RFWG F+NLCG+P  FF   FV+N  P  ++  +G NLTP
Sbjct: 120 EHPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFHHCFVHNLCPLLFLAPSGRNLTP 179

Query: 439 GDFKAAEIDSLYHICD 486
            +  A + + L  ICD
Sbjct: 180 AELPAKQREQLLGICD 195



 Score = 37.5 bits (83), Expect = 0.041
 Identities = 16/22 (72%), Positives = 17/22 (77%)
 Frame = +2

Query: 188 VPFGEISSVRDWLGIKGSVGKP 253
           VPFGE+S VRDWLGI G V  P
Sbjct: 96  VPFGEVSMVRDWLGIVGPVLTP 117


>AF125182-1|AAD17301.1|  270|Homo sapiens single-strand selective
           monofunctional uracil DNA glycosylase protein.
          Length = 270

 Score = 83.4 bits (197), Expect = 6e-16
 Identities = 36/76 (47%), Positives = 48/76 (63%)
 Frame = +1

Query: 259 EIKSRPVNGFDCKRTEVSGKRFWGLFKNLCGEPNKFFESSFVYNYLPEQWMKNNGCNLTP 438
           E   RPV G +C ++EVSG RFWG F+NLCG+P  FF   FV+N  P  ++  +G NLTP
Sbjct: 120 EHPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFHHCFVHNLCPLLFLAPSGRNLTP 179

Query: 439 GDFKAAEIDSLYHICD 486
            +  A + + L  ICD
Sbjct: 180 AELPAKQREQLLGICD 195



 Score = 37.5 bits (83), Expect = 0.041
 Identities = 16/22 (72%), Positives = 17/22 (77%)
 Frame = +2

Query: 188 VPFGEISSVRDWLGIKGSVGKP 253
           VPFGE+S VRDWLGI G V  P
Sbjct: 96  VPFGEVSMVRDWLGIVGPVLTP 117


>BC105607-1|AAI05608.1|  177|Homo sapiens SMUG1 protein protein.
          Length = 177

 Score = 37.5 bits (83), Expect = 0.041
 Identities = 16/22 (72%), Positives = 17/22 (77%)
 Frame = +2

Query: 188 VPFGEISSVRDWLGIKGSVGKP 253
           VPFGE+S VRDWLGI G V  P
Sbjct: 96  VPFGEVSMVRDWLGIVGPVLTP 117


>BC088352-1|AAH88352.1|  177|Homo sapiens SMUG1 protein protein.
          Length = 177

 Score = 37.5 bits (83), Expect = 0.041
 Identities = 16/22 (72%), Positives = 17/22 (77%)
 Frame = +2

Query: 188 VPFGEISSVRDWLGIKGSVGKP 253
           VPFGE+S VRDWLGI G V  P
Sbjct: 96  VPFGEVSMVRDWLGIVGPVLTP 117


>BC000417-1|AAH00417.1|  177|Homo sapiens SMUG1 protein protein.
          Length = 177

 Score = 37.5 bits (83), Expect = 0.041
 Identities = 16/22 (72%), Positives = 17/22 (77%)
 Frame = +2

Query: 188 VPFGEISSVRDWLGIKGSVGKP 253
           VPFGE+S VRDWLGI G V  P
Sbjct: 96  VPFGEVSMVRDWLGIVGPVLTP 117


>AL109806-4|CAC03741.2|  308|Homo sapiens chromosome 20 open reading
           frame 105 protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +1

Query: 289 DCKRTEVSGKRFWGLFKNLCGEPNKFFESSFVYNYLPEQWMKNNGCNLTPGDFKAAEIDS 468
           +C +  V  K  W    NLCG+      +  + +Y+  +W      N+TPG  +   I S
Sbjct: 64  NCMKVLVHSKFQWNYVINLCGQDFPIKTNREIIHYIRSKWSDK---NITPGVIQPLHIKS 120


>AK131203-1|BAD18395.1|  430|Homo sapiens 4.1.150).  protein.
          Length = 430

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +1

Query: 289 DCKRTEVSGKRFWGLFKNLCGEPNKFFESSFVYNYLPEQWMKNNGCNLTPGDFKAAEIDS 468
           +C +  V  K  W    NLCG+      +  + +Y+  +W      N+TPG  +   I S
Sbjct: 186 NCMKVLVHSKFQWNYVINLCGQDFPIKTNREIIHYIRSKWSDK---NITPGVIQPLHIKS 242


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,536,896
Number of Sequences: 237096
Number of extensions: 2023142
Number of successful extensions: 3243
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3243
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)