Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20503
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ...    29   2.8  
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p...    28   5.0  

>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
           protein R09A1.1 protein.
          Length = 1121

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 277 VNGFDCKRTEVSGKRFWGLFKNLCGEPNKFFESSFVYNYLPEQWMKN 417
           +NG    + E+ G RFW + K    +P     + +++N +   W  N
Sbjct: 216 INGKSSNKRELCGPRFWEILKE--NKPTFGMPNQYIFNDVNMMWSTN 260


>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
            protein R05D3.1 protein.
          Length = 1053

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 284  DLIVKELK*VGNDSGDCSRIYVENQTNFLNLV 379
            DL  K LK +  +  +   IYVENQ NF+ +V
Sbjct: 923  DLYEKRLK-IQKEECEAKLIYVENQLNFIEMV 953


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,453,966
Number of Sequences: 27780
Number of extensions: 340023
Number of successful extensions: 760
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)