Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20503
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24020.1 68418.m02822 septum site-determining protein (MIND) ...    31   0.87 
At3g09140.1 68416.m01075 expressed protein contains Pfam profile...    31   0.87 
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin...    29   2.7  
At5g48430.1 68418.m05988 expressed protein low similarity to ext...    28   6.1  
At1g38380.1 68414.m04694 hypothetical protein                          28   6.1  
At5g63180.1 68418.m07932 pectate lyase family protein similar to...    27   8.1  

>At5g24020.1 68418.m02822 septum site-determining protein (MIND)
           identical to MinD [Arabidopsis thaliana] GI:6759277;
           contains Pfam PF00991 : ParA family ATPase
          Length = 326

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 389 LYTKLDSKNLFGSPHKFLNNPQNRFPLTSVL 297
           L + L  K L  SP +F+NNP  R P+ SVL
Sbjct: 16  LPSSLSQKTLISSP-RFVNNPSRRSPIRSVL 45


>At3g09140.1 68416.m01075 expressed protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674);
           expression supported by MPSS
          Length = 473

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 344 KFLNNPQNRFPLTSVLLQSNPLTGLDLISSEVCQQSLLYPANL*LKKFHQME 189
           K   +PQ      + L +S     L+   +E C+Q LLYP ++ L+KF  M+
Sbjct: 53  KHQKSPQVGIGCFNNLYKSVSEMDLESFQTEACKQVLLYPRSVNLEKFRNMK 104


>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
           (CCCH type) family protein contains Pfam domains
           PF00013: KH domain and PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 240

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 167 VASGSLQVPFGEISSVRDWLGIKGSVGKPH 256
           VASG ++   G + SV+   GI G  GKPH
Sbjct: 172 VASGMVRELIGRLGSVKKPQGIGGPEGKPH 201


>At5g48430.1 68418.m05988 expressed protein low similarity to
           extracellular dermal glycoprotein EDGP precursor [Daucus
           carota] GI:285741, SP|P13917 Basic 7S globulin precursor
           {Glycine max}; expression supported by MPSS
          Length = 406

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 612 ILPVFYFEMNTCPEFFVRV 556
           ILP+F F +NT  EFF+ +
Sbjct: 38  ILPIFTFTLNTNQEFFIHI 56


>At1g38380.1 68414.m04694 hypothetical protein
          Length = 378

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
 Frame = +1

Query: 322 FWGLFKNLCGEPNKFFESSF---VYNYLPEQWMKNNGCNLTPGDFKAAEIDSLYHICDPI 492
           FW  F N   +      S     V  YL         C + PG  + +E+  LYH+    
Sbjct: 155 FWSRFSNGIYDSKDAVHSEIRHLVLRYLVRLISSTLFCKMEPGKMRLSELLVLYHVVHDF 214

Query: 493 FKKVLDF 513
           F   L F
Sbjct: 215 FPDSLRF 221


>At5g63180.1 68418.m07932 pectate lyase family protein similar to
           pectate lyase GP:14289169 from [Salix gilgiana]
          Length = 432

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 239 SLLYPANL*LKKFHQMEPARNQMLP*LY--FNLLFCCTILFSGLGCQSVPL 93
           SLL P+NL   K       RN ML   Y  F L+F C ILFS L   S+P+
Sbjct: 6   SLLIPSNLSTTKSQ-----RNTMLNSSYLSFALIFFCCILFSAL-ASSLPV 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,358,473
Number of Sequences: 28952
Number of extensions: 305535
Number of successful extensions: 710
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)