Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20502
         (480 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   3.4  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   4.5  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      21   7.8  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 88  SCSLCGPEFRR 120
           SC +CG  FRR
Sbjct: 109 SCDICGKAFRR 119


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 199 YFGSYTQ*I*RLLRSLFTGYQVCRYKEM 282
           YF +Y     +LL  L T   + RYKE+
Sbjct: 154 YFQNYIHFFYQLLLYLITDMILMRYKEL 181


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 155 YERKQREMIAKEEDLISARIPNKYRDY 235
           +E      +AK   + S  + NK RD+
Sbjct: 330 FEEFVHPTVAKRGSITSKNVANKIRDF 356


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,563
Number of Sequences: 336
Number of extensions: 1973
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)