Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20502
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   1.9  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    26   2.6  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   2.6  
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    25   4.5  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    25   5.9  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   7.8  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 453 LTPLTTLVFNDLGSSTNPIFPYSKATFPFKFLH 355
           L PL+ +  + L + T P+ P+S +  P  F H
Sbjct: 833 LEPLSCIPSSSLTNFTQPLVPFSVSRDPISFYH 865


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 379 DVPVQIPSYVKRNLVVRNSNNCVSHGRIDKE 287
           DVPV  P Y+K  +   N++     G IDKE
Sbjct: 456 DVPVSSPDYLKDLVNALNTSKEQHKGAIDKE 486


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 158 ERKQREMIAKEEDLISARIPNKYRDYCAHYLLAIKFVAIKKCRFFIDA 301
           E + R++  K  D +S+  P K +D+   +L       ++ CR+ ID+
Sbjct: 325 ESQIRKISLKIIDYLSSHEPEKDQDFVVDFLDRFSLRIVEICRYDIDS 372


>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 63  VVMYRIKLSPDKILFCYI 10
           V+  RIKLSP+K +F +I
Sbjct: 63  VIRKRIKLSPEKAIFIFI 80


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 459 TYL-TPLTTLVFNDLGSSTNPIFPYSKATFPFKFLH 355
           +YL TPLT ++ N L  +    +     TF FK LH
Sbjct: 104 SYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPLH 139


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1190

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 394  PVL*GDVPVQIPSYVKRNLVVRNSNNCVSHGRID 293
            P+L G  PV +PS     +    S N  S+GR D
Sbjct: 1048 PLLNGKSPVGVPSEAALRVSTDVSTNISSNGRAD 1081


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,118
Number of Sequences: 5004
Number of extensions: 32540
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)