Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20502
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0212 - 1668776-1669105                                           32   0.21 
05_04_0436 + 21226656-21226695,21226819-21226934,21227059-212272...    29   2.6  

>03_01_0212 - 1668776-1669105
          Length = 109

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 170 REMIAKEEDLISARIPNKYRDYCAHYLLAIKFVAIKKCR 286
           +  IA + ++  AR+P  YRD CAH L     + + KCR
Sbjct: 15  KPQIATQAEMSEARLPLPYRDQCAHLL-----IPLNKCR 48


>05_04_0436 +
           21226656-21226695,21226819-21226934,21227059-21227210,
           21227309-21227394,21227999-21228126,21228267-21228317,
           21228574-21228660,21229418-21229487,21230334-21230470,
           21230855-21230932,21231912-21231998
          Length = 343

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -1

Query: 468 ILFTYLTPLTTLVFNDLGSSTNPIFPYSKATFPFKFLHT*NVIL--LFAIQIIVFLMGAS 295
           I + + TP+   V     +    +FP   A  PF  L   ++++  +F    + F +   
Sbjct: 199 IFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDIVIPGIFVALALRFDVSRG 258

Query: 294 IKKRHF 277
           IK R+F
Sbjct: 259 IKNRYF 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,447,388
Number of Sequences: 37544
Number of extensions: 178711
Number of successful extensions: 395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)