Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20502
         (480 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)                 29   2.0  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
          Length = 1282

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 49  SIHYHHGANYGRISCSLCGPEF 114
           S+H  HGANYG +   +  P++
Sbjct: 464 SVHIQHGANYGNVDSFISEPDY 485


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 134  DPQAGFQYERKQREMIAKEEDLISARIPNKYRDYCAH 244
            DP+  FQ+ +K        E+L  +++ N Y+    H
Sbjct: 1032 DPRGTFQHTKKTERAATSNEELAPSKLKNYYKAISEH 1068


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,498,350
Number of Sequences: 59808
Number of extensions: 225168
Number of successful extensions: 569
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)