Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20502
(480 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73906-5|CAA98116.1| 123|Caenorhabditis elegans Hypothetical pr... 52 2e-07
AF106590-2|AAC78237.2| 301|Caenorhabditis elegans Hypothetical ... 32 0.25
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ... 29 1.3
AF016675-7|AAB66135.1| 387|Caenorhabditis elegans Hypothetical ... 29 2.3
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 28 3.1
AF273807-1|AAG15156.1| 416|Caenorhabditis elegans nuclear recep... 28 3.1
AF016675-1|AAF02172.2| 416|Caenorhabditis elegans Nuclear hormo... 28 3.1
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 28 3.1
AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical ... 28 4.0
AF016421-11|AAM45373.2| 417|Caenorhabditis elegans Hypothetical... 28 4.0
AF016685-2|AAG24148.1| 404|Caenorhabditis elegans Hypothetical ... 27 5.3
Z75550-5|CAA99924.2| 747|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z68218-3|CAA92473.1| 325|Caenorhabditis elegans Hypothetical pr... 27 7.0
AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical... 27 7.0
AF022978-2|AAG24183.1| 440|Caenorhabditis elegans Nuclear hormo... 27 7.0
AB069909-1|BAB62876.1| 747|Caenorhabditis elegans junctophilin ... 27 7.0
Z83233-8|CAB05759.2| 378|Caenorhabditis elegans Hypothetical pr... 27 9.3
U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 27 9.3
AY204203-1|AAO39204.1| 391|Caenorhabditis elegans nuclear recep... 27 9.3
AF022978-3|AAG24182.2| 403|Caenorhabditis elegans Hypothetical ... 27 9.3
AF016675-6|AAF02171.2| 391|Caenorhabditis elegans Nuclear hormo... 27 9.3
AC024881-9|AAK71410.1| 588|Caenorhabditis elegans Hypothetical ... 27 9.3
>Z73906-5|CAA98116.1| 123|Caenorhabditis elegans Hypothetical
protein D2030.4 protein.
Length = 123
Score = 52.0 bits (119), Expect = 2e-07
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +2
Query: 116 DDNPTFDPQAGFQYERKQREMIAKEEDLISARIPNKYRDYCAHYLLAI 259
D PTFDPQ GF+ RK REM A E++ ++ RDYCAH+L+++
Sbjct: 22 DRPPTFDPQYGFERPRKVREMKATWEEMEQWKLKPAQRDYCAHHLISL 69
>AF106590-2|AAC78237.2| 301|Caenorhabditis elegans Hypothetical
protein F08B6.3 protein.
Length = 301
Score = 31.9 bits (69), Expect = 0.25
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 29 LSGDNLILYITTMGQIMGGYHARSVDLNSDDNPTFDPQAGFQYERKQREMIAKEE 193
L+GD L ++ G G Y A S+ NSDD+ D Q ++ K + AK E
Sbjct: 232 LAGDELTDWLLVDGTTAGSYEAESLLTNSDDDK--DGQLSYEEIVKHHALFAKTE 284
>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
protein Y76B12C.2 protein.
Length = 1119
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 131 FDPQAGFQYERKQREMIAKEEDLISARIPNKYRDYCAHYLLAIK 262
F P ERK+ EM+ EDL+ +P +Y H L A++
Sbjct: 804 FLPPFAANSERKKWEMMQMREDLVKRPLPTVMSEYKNHPLYALE 847
>AF016675-7|AAB66135.1| 387|Caenorhabditis elegans Hypothetical
protein T27B7.3 protein.
Length = 387
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 64 HGANYGRISCSLCGPEFRR*SYF*PSSWISIRKKTTRND 180
HG ++G I+C CG FRR S+ S WI KK + D
Sbjct: 16 HGTHFGVITCRACGVFFRR-SF--KSKWIF--KKCKKED 49
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical protein
K04B12.1 protein.
Length = 1764
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +2
Query: 122 NPTFDPQAGFQYERKQREMIAKEEDLISARIPNKYRDYCAHYLLAIKFVAIKK 280
NPT P G +Y + ++ +I + +L A PN ++ + + + V +++
Sbjct: 1013 NPTLSPFKGVRYHQGEQSLILEGHNLNLAAEPNDFKIFIGNERCYVTLVDVRQ 1065
>AF273807-1|AAG15156.1| 416|Caenorhabditis elegans nuclear receptor
NHR-59 protein.
Length = 416
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 64 HGANYGRISCSLCGPEFRR 120
HGA++G I+C C FRR
Sbjct: 28 HGAHFGAITCRACAAFFRR 46
>AF016675-1|AAF02172.2| 416|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 59 protein.
Length = 416
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 64 HGANYGRISCSLCGPEFRR 120
HGA++G I+C C FRR
Sbjct: 28 HGAHFGAITCRACAAFFRR 46
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +2
Query: 122 NPTFDPQAGFQYERKQREMIAKEEDLISARIPNKYRDYCAHYLLAIKFVAIKK 280
NPT P G +Y + ++ +I + +L A PN ++ + + + V +++
Sbjct: 1015 NPTLSPFKGVRYHQGEQSLILEGHNLNLAAEPNDFKIFIGNERCYVTLVDVRQ 1067
>AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical
protein T27B7.2 protein.
Length = 476
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 64 HGANYGRISCSLCGPEFRR*SYF*PSSWIS 153
HG ++G ++C C FRR S S WI+
Sbjct: 52 HGTHFGAVTCRACAAFFRRSS---KSKWIN 78
>AF016421-11|AAM45373.2| 417|Caenorhabditis elegans Hypothetical
protein F44E7.8 protein.
Length = 417
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 55 HYHHGANYGRISCSLCGPEFRR 120
H HG ++G +SC C FRR
Sbjct: 31 HTAHGVHFGVLSCRACAAFFRR 52
>AF016685-2|AAG24148.1| 404|Caenorhabditis elegans Hypothetical
protein F59E11.10 protein.
Length = 404
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 64 HGANYGRISCSLCGPEFRR 120
HG +YG +SC C FRR
Sbjct: 29 HGNHYGVVSCRACAAFFRR 47
>Z75550-5|CAA99924.2| 747|Caenorhabditis elegans Hypothetical
protein T22C1.7 protein.
Length = 747
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 86 YHARSVDLNSDDNPTFDPQAGFQYERKQREMIAKEEDLISARIPN 220
YH + ++ ++ F PQ G+ Q + +DL+ IPN
Sbjct: 480 YHNHVMPNSNTNHVNFMPQYGYSDPNSQLQTPINSQDLLQPHIPN 524
>Z68218-3|CAA92473.1| 325|Caenorhabditis elegans Hypothetical
protein K01H12.3 protein.
Length = 325
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 67 GANYGRISCSLCGPEFRR 120
G ++G ISC+ CG FRR
Sbjct: 12 GYHFGAISCAACGAFFRR 29
>AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical
protein ZK488.1 protein.
Length = 358
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 55 HYHHGANYGRISCSLCGPEFRR*SYF*PSSWISIRKKTTRN 177
H HG ++G SC C FRR + S W S +K T+N
Sbjct: 57 HGAHGNHFGATSCRACAAFFRRAA---NSKW-SFQKCQTQN 93
>AF022978-2|AAG24183.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 130 protein.
Length = 440
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 64 HGANYGRISCSLCGPEFRR 120
HG ++G ISC C FRR
Sbjct: 45 HGNHFGAISCRACAAFFRR 63
>AB069909-1|BAB62876.1| 747|Caenorhabditis elegans junctophilin
protein.
Length = 747
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 86 YHARSVDLNSDDNPTFDPQAGFQYERKQREMIAKEEDLISARIPN 220
YH + ++ ++ F PQ G+ Q + +DL+ IPN
Sbjct: 480 YHNHVMPNSNTNHVNFMPQYGYSDPNSQLQTPINSQDLLQPHIPN 524
>Z83233-8|CAB05759.2| 378|Caenorhabditis elegans Hypothetical
protein K06B4.8 protein.
Length = 378
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 67 GANYGRISCSLCGPEFRR 120
G NYG ++CS C FRR
Sbjct: 31 GMNYGALTCSACKMFFRR 48
>U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical
protein T22F7.3 protein.
Length = 988
Score = 26.6 bits (56), Expect = 9.3
Identities = 8/31 (25%), Positives = 22/31 (70%)
Frame = -3
Query: 349 KRNLVVRNSNNCVSHGRIDKEAAFLYSDKLD 257
++++ + ++ NC+SH +++ + YS+K+D
Sbjct: 186 EQDVFIADTYNCISHPQVNNDLFNEYSEKVD 216
>AY204203-1|AAO39204.1| 391|Caenorhabditis elegans nuclear receptor
NHR-115 protein.
Length = 391
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 64 HGANYGRISCSLCGPEFRR 120
HG ++G +SC C FRR
Sbjct: 16 HGTHFGIVSCRACAAFFRR 34
>AF022978-3|AAG24182.2| 403|Caenorhabditis elegans Hypothetical
protein T01G6.6 protein.
Length = 403
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 64 HGANYGRISCSLCGPEFRR 120
HG ++G +SC C FRR
Sbjct: 17 HGNHFGAVSCRACSAFFRR 35
>AF016675-6|AAF02171.2| 391|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 115 protein.
Length = 391
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 64 HGANYGRISCSLCGPEFRR 120
HG ++G +SC C FRR
Sbjct: 16 HGTHFGIVSCRACAAFFRR 34
>AC024881-9|AAK71410.1| 588|Caenorhabditis elegans Hypothetical
protein Y97E10B.1 protein.
Length = 588
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 379 DVPVQIPSYVKRNLVVRNSNNCVS 308
++P +IPSYV+R++VV S VS
Sbjct: 185 EIPFKIPSYVQRDVVVCTSPLFVS 208
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,576,200
Number of Sequences: 27780
Number of extensions: 176492
Number of successful extensions: 625
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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