Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20502
         (480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61840.1 68414.m06978 DC1 domain-containing protein similar t...    31   0.30 
At2g02050.1 68415.m00140 NADH-ubiquinone oxidoreductase B18 subu...    30   0.70 
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ...    29   1.2  
At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy cha...    28   3.7  
At2g18915.2 68415.m02208 F-box family protein / LOV kelch protei...    27   8.7  
At2g18915.1 68415.m02207 F-box family protein / LOV kelch protei...    27   8.7  

>At1g61840.1 68414.m06978 DC1 domain-containing protein similar to
           hypothetical protein GI:3184279 from [Arabidopsis
           thaliana]; contains Pfam profile PF03107: DC1 domain
          Length = 814

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +1

Query: 277 EMPLLYRCAHEKHNYLNCEQQDYVLRMKXXXXXXXXXXXXXXISATA*IIEDKC-S*WC* 453
           E P+   C  E H  LNC + D+V+ +K               S T    E+ C   WC 
Sbjct: 663 EKPICQMCKSESHIPLNCIKCDFVVCIKCATLPFKAKYKHDRHSLTILWGEEVCGKDWCE 722

Query: 454 ICK*NRSD 477
           +C+ N  D
Sbjct: 723 VCERNLGD 730


>At2g02050.1 68415.m00140 NADH-ubiquinone oxidoreductase B18
           subunit, putative contains Pfam PF05676: NADH-ubiquinone
           oxidoreductase B18 subunit (NDUFB7); similar to
           NADH-ubiquinone oxidoreductase B18 subunit (EC 1.6.5.3)
           (EC 1.6.99.3) (Complex I-B18) (CI-B18) (Cell adhesion
           protein SQM1) (Swiss-Prot:P17568) [Homo sapiens];
           similar to NADH:ubiquinoe oxidoreductase NDUFB7 subunit
           (GI:9651635) [Homo sapiens]
          Length = 103

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 170 REMIAKEEDLISARIPNKYRDYCAHYLLAIKFVAIKKCR 286
           ++MIA +E++ +A+I    RD CAH L     + + KCR
Sbjct: 8   KKMIATQEEMSAAKIALGSRDMCAHLL-----IPLNKCR 41



 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 265 CRYKEMPLLYRCAHEKHNYLNCEQQDYVLRM 357
           CR  E  L ++C  E+H Y  CE +  + RM
Sbjct: 40  CRQAEFYLPWKCEDERHVYEKCEYELVMERM 70


>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 402

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 298 CAHEKHNYLNCEQQDYVLRMKXXXXXXXXXXXXXXISATA*IIED-KCS*WC*ICK*NRS 474
           C  E+HN LNC + D+++ MK                 TA   E+ +   WC +C+ N  
Sbjct: 292 CKTERHNQLNCIKCDFIVCMKCATLPYRARYEHDKHFLTAIWEEEVREKDWCEVCERNLR 351

Query: 475 D 477
           D
Sbjct: 352 D 352


>At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy
           chain-related low similarity to Inter-alpha-inhibitor H4
           heavy chain [Rattus norvegicus] GI:2292988; contains
           Pfam profile PF00092: von Willebrand factor type A
           domain
          Length = 758

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
 Frame = -3

Query: 379 DVPVQIPSYV--------KRNLVVRNSNNCVSHGRI 296
           +VP + PSYV        KR  +V N N+CVS G I
Sbjct: 207 NVPFRFPSYVNPIGKEIIKREKIVLNMNSCVSGGEI 242


>At2g18915.2 68415.m02208 F-box family protein / LOV kelch protein 2
           (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
           F-box subunit; identical to Adagio 2 GI:13487070 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01344:
           Kelch motif and PF00646: F-box domain; identical to cDNA
           LOV kelch protein 2 GI:18146957; identical to cDNA
           Adagio 2 (ADO2) GI:13487069
          Length = 611

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 29  LSGDNLILYITTMGQIMGGYHARSV 103
           L  DN I+Y+ T+ +I+ GY A  V
Sbjct: 53  LEPDNPIIYVNTVFEIVTGYRAEEV 77


>At2g18915.1 68415.m02207 F-box family protein / LOV kelch protein 2
           (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
           F-box subunit; identical to Adagio 2 GI:13487070 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01344:
           Kelch motif and PF00646: F-box domain; identical to cDNA
           LOV kelch protein 2 GI:18146957; identical to cDNA
           Adagio 2 (ADO2) GI:13487069
          Length = 601

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 29  LSGDNLILYITTMGQIMGGYHARSV 103
           L  DN I+Y+ T+ +I+ GY A  V
Sbjct: 53  LEPDNPIIYVNTVFEIVTGYRAEEV 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,852,777
Number of Sequences: 28952
Number of extensions: 159064
Number of successful extensions: 372
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)