Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20501
         (658 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7PZR5 Cluster: Chromosome chr15 scaffold_40, whole gen...    33   4.6  
UniRef50_A7E639 Cluster: Putative uncharacterized protein; n=1; ...    33   4.6  

>UniRef50_A7PZR5 Cluster: Chromosome chr15 scaffold_40, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr15 scaffold_40, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 242

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 114 YGVPQNPVRYPPRPGIRKSIPQR*KKLPANRKRKS 10
           Y  P  PVR PP+PG+RK I       P  R+R+S
Sbjct: 15  YRDPNAPVRLPPKPGLRKPILP--STFPVKRRRRS 47


>UniRef50_A7E639 Cluster: Putative uncharacterized protein; n=1;
           Sclerotinia sclerotiorum 1980|Rep: Putative
           uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 839

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 174 SYKILSNS*LNG*LHTRITSVRDAKLNRRLRPLGAFCNIKDERIAAMQHYPVKTS 338
           S KIL  S L      +I  + D KL R + P+G   N+   R + + HY  +TS
Sbjct: 7   SMKILRTSLLTDNQLEKIIDLPDHKLARCMMPVGLLQNVASLRFSGLDHYTTETS 61


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,028,963
Number of Sequences: 1657284
Number of extensions: 9823076
Number of successful extensions: 24348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24313
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)